Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e02r
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 92 3e-19
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 92 3e-19
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 59 4e-09
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 37 0.017
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 37 0.017
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 37 0.017
U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 29 2.6
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 92.3 bits (219), Expect = 3e-19
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKA--PSGTHSV 564
F KG+YFADM SKS YC L LLC+VALGN+++ + ++ S+ P+G SV
Sbjct: 817 FGKGVYFADMFSKSFFYCRANAKEEAYL-LLCDVALGNVQQLMASKNVSRQTLPAGFQSV 875
Query: 563 WGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQVKVKYLI 399
G+GR P + PDG +PLG + + LLYNEFIVYDV Q+++KYL+
Sbjct: 876 QGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLV 935
Query: 398 EMRFDY 381
++ +
Sbjct: 936 RVKMHH 941
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 1 protein.
Length = 945
Score = 92.3 bits (219), Expect = 3e-19
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKA--PSGTHSV 564
F KG+YFADM SKS YC L LLC+VALGN+++ + ++ S+ P+G SV
Sbjct: 817 FGKGVYFADMFSKSFFYCRANAKEEAYL-LLCDVALGNVQQLMASKNVSRQTLPAGFQSV 875
Query: 563 WGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQVKVKYLI 399
G+GR P + PDG +PLG + + LLYNEFIVYDV Q+++KYL+
Sbjct: 876 QGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLV 935
Query: 398 EMRFDY 381
++ +
Sbjct: 936 RVKMHH 941
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 58.8 bits (136), Expect = 4e-09
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGN----MKECVNAEGFSKAPSGTH 570
F G+YFA++ +KSANYCC + V MLLCEV N + ++A+ + T
Sbjct: 413 FGNGVYFANVPTKSANYCCPEASKRV-FMLLCEVETANPLVLYESEIDADEKMEKAKKT- 470
Query: 569 SVWGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMR 390
SV+ G+ P+ E+ +G+ E + LLY+E+++++ K+KY++E++
Sbjct: 471 SVYAAGK--HTPRDTVEI-NGIPAFKSNLETIEEETRLLYDEYVMFNKEHFKIKYVVEVK 527
Query: 389 FD 384
D
Sbjct: 528 VD 529
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 58.8 bits (136), Expect = 4e-09
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGN----MKECVNAEGFSKAPSGTH 570
F G+YFA++ +KSANYCC + V MLLCEV N + ++A+ + T
Sbjct: 413 FGNGVYFANVPTKSANYCCPEASKRV-FMLLCEVETANPLVLYESEIDADEKMEKAKKT- 470
Query: 569 SVWGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMR 390
SV+ G+ P+ E+ +G+ E + LLY+E+++++ K+KY++E++
Sbjct: 471 SVYAAGK--HTPRDTVEI-NGIPAFKSNLETIEEETRLLYDEYVMFNKEHFKIKYVVEVK 527
Query: 389 FD 384
D
Sbjct: 528 VD 529
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
F GIY AD KS +YC + + ML+C+ ALG ++
Sbjct: 2114 FGSGIYLADSFEKSTHYCQPSAGG-INYMLVCQTALGKVR 2152
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
F GIY AD KS +YC + + ML+C+ ALG ++
Sbjct: 2152 FGSGIYLADSFEKSTHYCQPSAGG-INYMLVCQTALGKVR 2190
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
F GIY AD KS +YC + + ML+C+ ALG ++
Sbjct: 2114 FGSGIYLADSFEKSTHYCQPSAGG-INYMLVCQTALGKVR 2152
>U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical
protein R03H10.7 protein.
Length = 353
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 492 ERHNESVGQFLIHFRVRLSSTDAPHGMRAGRGFRET-FSIDTL---LHIPESDLTQQH 653
E ESV F IH RV L T PH + F T F+ DT+ PE+D+ Q+
Sbjct: 118 ENLKESVNYFKIHGRVTLMDTRPPHHYQKRFNFEITDFNGDTIACSASSPEADVFYQN 175
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 481 TGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHSFIFPRA 636
T +P+ T S S +FG+ +V TP + PDG + S +T S + A
Sbjct: 20 TSLPT-TTSVLDKSRSLFGNSAVISTPARDSTPDGHIVDSSVITKSSVIIEA 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,845
Number of Sequences: 27780
Number of extensions: 315174
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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