Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02r
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A...   127   7e-30
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...   123   1e-28
At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family pro...    51   7e-07
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    29   3.2  
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    29   3.2  
At2g35510.1 68415.m04349 WWE domain-containing protein contains ...    29   4.3  
At4g17130.1 68417.m02579 hypothetical protein                          28   5.6  
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro...    28   5.6  
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro...    28   5.6  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    27   9.8  
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    27   9.8  
At4g11450.1 68417.m01843 expressed protein                             27   9.8  

>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
           ADP-ribosyltransferase / poly[ADP-ribose] synthetase
           (APP) identical to  SP|Q11207 Poly [ADP-ribose]
           polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
           ribosyltransferase) (Poly[ADP-ribose] synthetase)
           {Arabidopsis thaliana}
          Length = 637

 Score =  127 bits (307), Expect = 7e-30
 Identities = 60/122 (49%), Positives = 85/122 (69%), Gaps = 2/122 (1%)
 Frame = -2

Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVW 561
           F KG+YFADM SKSANYC        G++LLCEVALG+M E + ++      P G  S  
Sbjct: 515 FGKGVYFADMFSKSANYCYANTGANDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTK 574

Query: 560 GVGRTEPDPKMNKELPDGLIVPLGTPVDRA-ENSTLLYNEFIVYDVAQVKVKYLIEMRFD 384
           GVG+T P+P   + L DG++VPLG PV+R+     LLYNE+IVY+V Q+K++Y+I+++F+
Sbjct: 575 GVGKTAPNPSEAQTLEDGVVVPLGKPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFN 634

Query: 383 YR 378
           Y+
Sbjct: 635 YK 636


>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
            NAD(+) ADP-ribosyltransferase, putative /
            poly[ADP-ribose] synthetase, putative similar to
            poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
            contains Pfam profiles PF00644: Poly(ADP-ribose)
            polymerase catalytic domain, PF00645: Poly(ADP-ribose)
            polymerase and DNA-Ligase Zn-finger region, PF02877:
            Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
            BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score =  123 bits (297), Expect = 1e-28
 Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = -2

Query: 737  FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKAPSGTHSVWG 558
            F KGIYFAD+VSKSA YC T + NPVGLMLL EVALG + E   A+   K P G HS  G
Sbjct: 862  FGKGIYFADLVSKSAQYCYTCKKNPVGLMLLSEVALGEIHELTKAKYMDKPPRGKHSTKG 921

Query: 557  VGRTEPDPKMNKELPDGLIVPLGTPV-DRAENSTLLYNEFIVYDVAQVKVKYLIEMRFDY 381
            +G+  P      +    + VP G PV  + + S L+YNE+IVYD AQVK+++L+++RF +
Sbjct: 922  LGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELMYNEYIVYDTAQVKLQFLLKVRFKH 981

Query: 380  R 378
            +
Sbjct: 982  K 982


>At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family protein
            similar to poly(ADP)-ribose polymerase [Zea mays]
            GI:3928871; contains Pfam profiles PF00644:
            Poly(ADP-ribose) polymerase catalytic domain, PF00533:
            BRCA1 C Terminus (BRCT) domain, PF05406: WGR domain
          Length = 815

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
 Frame = -2

Query: 737  FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGN-MKECVNAEGFSKAPSGTH-SV 564
            F + I  +D  +++A Y  T  + P G ++L   +LG  + E  +    +K        V
Sbjct: 683  FGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGEEVTEFTSPPEDTKTLEDKKIGV 742

Query: 563  WGVGRTEPDPKMNKELPDGLIVPLGTPV-DRAENSTLLYNEFIVYDVAQVKVKYLIEMRF 387
             G+GR + +   +    D + VP G  V    ++S L YNE+ VYD  Q  +++L+E+++
Sbjct: 743  KGLGRKKTEESEHFMWRDDIKVPCGRLVPSEHKDSPLEYNEYAVYDPKQTSIRFLVEVKY 802

Query: 386  D 384
            +
Sbjct: 803  E 803


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 457 SVLFSALSTGVPSGTMSPSGNSLFIFGSGSV 549
           SVLFSAL  GV  G    SG SL  + +GS+
Sbjct: 5   SVLFSALGVGVGLGIGLASGQSLGKWANGSI 35


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 270 HLQTEQHEIFSNIASSITLLLNRMT 344
           HL+TEQH+  SN+ S++  ++N+ T
Sbjct: 185 HLKTEQHQDHSNLISAMLNMINKPT 209


>At2g35510.1 68415.m04349 WWE domain-containing protein contains
           Pfam domain, PF02825: WWE domain
          Length = 568

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 728 GIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
           G++ A+    SA YC    +N V  M+LC V +GNM+
Sbjct: 359 GVHAANCPYFSARYC-DIDDNGVRHMVLCRVIMGNME 394


>At4g17130.1 68417.m02579 hypothetical protein
          Length = 747

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 466 FSALSTGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHSFIFPR 633
           + ALS  V SG+  PS  S F   + SV P    +CV   + +  +A+  S +  R
Sbjct: 625 YVALSCVVSSGSTPPSLASTFCILASSVSPCSLRDCVAISSTDMYAAMNLSLLLLR 680


>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 588

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 716 ADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
           AD    SA YC    N  V  M+LC V +GNM+
Sbjct: 369 ADCPYFSARYCDVDENG-VRYMVLCRVIMGNME 400


>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 589

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 716 ADMVSKSANYCCTTRNNPVGLMLLCEVALGNMK 618
           AD    SA YC    N  V  M+LC V +GNM+
Sbjct: 369 ADCPYFSARYCDVDENG-VRYMVLCRVIMGNME 400


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1123

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 285  QHEIFSNIASSITLLLNRMTYE*KENNM*LLSVIESHFNQVFHF 416
            QHE+F+ +     ++++   +   E+N  L  +I  H +  FHF
Sbjct: 1026 QHEVFAVLEKGSHMVISDCCFPFNEDNAPLAELIYDHVDIQFHF 1069


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 299 KYFMLFSL*MNSRKSCFTRI*KKNFFLYFFCQLYPRKKITFIINIYDRSYSS 144
           K+   F+  + S  SCF      +F+     +L+PRK + FI +IY   + S
Sbjct: 133 KFITFFNKKLTSNGSCFVSGVPGSFY----SRLFPRKSLHFIYSIYSIHFLS 180


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 461 TLLYNEFIVYDVAQVK 414
           TL+ NEF++YD+AQ +
Sbjct: 367 TLMVNEFVLYDIAQAR 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,003
Number of Sequences: 28952
Number of extensions: 271195
Number of successful extensions: 622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)