Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.6  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    26   3.7  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.0  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   6.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   8.7  

>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 189 FLFTTLTGCSTCLCVFNLIWQVCHFFAILLCITSNVLFMKVDIRFYFCYIQCTTIKQT 16
           F+F  LT      C F++++ +C+F   LL   SN    K  ++ +  +    TI  T
Sbjct: 2   FIFNVLT----IRCTFHVLFAICYFCDHLLQYISNSRDSKAGLKIFLVFELAVTIFNT 55


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 223 PSQQCAVS-LDQFFVYNPYRLLYLSLRIQLDMASLPF 116
           P + C  S L+Q   Y+PYR++Y+S  +      + F
Sbjct: 453 PRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGF 489


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 147 VFNLIWQVCHFFAILLCITSNVLFMKVDIRFYFCYIQCTTIKQ 19
           +F +IW +  FF +L  I  NV    + + FY+     T + Q
Sbjct: 52  LFLIIWLIGDFFNVLGSIYGNVSSTVLVLSFYYIVSDSTLLMQ 94


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 460 DNSALKDFKVEYSKSSRAT 516
           +NSALKD  VEY  +  AT
Sbjct: 87  ENSALKDINVEYQSNLSAT 105


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 511 ATCPECEIKICKDEIRICKILYDTEVGMKYG 603
           A C E ++++ KDE+ +C IL+D  +   +G
Sbjct: 68  ADCVETDVRLTKDEV-VC-ILHDRNLNRVFG 96


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 450 GGSLVTFTFAFGFGFLNGHY 391
           GGS  + +FA+GFG + G Y
Sbjct: 341 GGSFESLSFAWGFGCMLGVY 360


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 47  QK*NLISTF--IKRTLEVIHNRIAKKWQTCHIKLNTQRQVEQPVRVVNKKL 193
           Q+ NL++ +  I +    +++ I+  W   ++KL T R+V QP  + ++ L
Sbjct: 617 QRWNLVNIWRHIFKETVTLNSGISCPWYGTNVKLFTVREVRQPTILQSRSL 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,345
Number of Sequences: 5004
Number of extensions: 42689
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)