Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02f
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    54   7e-08
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748...    46   3e-05
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    30   1.2  

>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
 Frame = +1

Query: 139 VEYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDCF-FKKRRLNSFTE 312
           VEYAK+GR++CK C + I +G+LR+    +    FD  +  W+H  CF      ++   +
Sbjct: 17  VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK--WYHVACFPSSSHPIDPVEK 74

Query: 313 IANFNVLKNEDQKRIK---TTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
           +  F+ +K ED++ ++    T +    AV    +                 ++N ++   
Sbjct: 75  VKGFDSIKEEDREEVRELNKTCKRDHTAVGTTEESSPKKVKASPGV-----AENVSI--- 126

Query: 484 KVEYSKSSRATCPECEIKICKDEIRI 561
            VEY+KS R+TC  C   I    +R+
Sbjct: 127 SVEYAKSGRSTCKGCSESIAAGALRL 152



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 VEYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDCF 279
           VEYAK+GR+ CKGC + I  G+LR+   ++    FD  +  W+H  CF
Sbjct: 128 VEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK--WYHIACF 173


>07_03_0061 +
           12972944-12973054,12974509-12974536,12974701-12974870,
           12975878-12976043,12976122-12976425,12977155-12977350,
           12977464-12977622,12978311-12978371,12978904-12978967,
           12979099-12979346,12980039-12980250,12980344-12980456,
           12980547-12980623,12980710-12980873,12981493-12981564,
           12981565-12981760,12981813-12981854,12982358-12982440,
           12982534-12982671,12982942-12983124,12983216-12983263
          Length = 944

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/81 (24%), Positives = 44/81 (54%)
 Frame = +1

Query: 139 VEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNSFTEIA 318
           +E AK+ R +C+ C +KI +G++R+     S+  +G+   W+H  CF +     +    +
Sbjct: 82  IEVAKSARTSCRRCGEKIKKGTVRV-----SSKLEGQ--GWYHASCFLEMSPAATVENFS 134

Query: 319 NFNVLKNEDQKRIKTTIENSA 381
            + +L +ED++ +   ++  A
Sbjct: 135 GWEILSHEDKRAVLDLVKKDA 155



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +1

Query: 475 KDFKVEYSKSSRATCPECEIKICKDEIRICKILYD 579
           K +K EY+KS R++C  C   I KD++R+ K++++
Sbjct: 6   KAWKAEYAKSGRSSCKSCRSPIGKDQLRLGKMMWN 40



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMV 225
           ++ EYAK+GR++CK C+  I +  LR+  M+
Sbjct: 8   WKAEYAKSGRSSCKSCRSPIGKDQLRLGKMM 38


>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 181 KQKIDQGSLRIAVMVQSAFFDGKQPNWHH 267
           K + D GS+ + V+  S F D  QP WH+
Sbjct: 355 KDEPDVGSVDLPVLAVSGFLDAAQPIWHN 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,833
Number of Sequences: 37544
Number of extensions: 230390
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)