Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e02f
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 91 6e-19
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35) 61 6e-10
SB_10139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_49399| Best HMM Match : DUF1366 (HMM E-Value=8.1) 28 5.1
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_56804| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.8
SB_32593| Best HMM Match : CXCXC (HMM E-Value=6.3) 28 6.8
SB_22551| Best HMM Match : TNFR_c6 (HMM E-Value=6.1) 28 6.8
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_5494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39) 27 9.0
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 91.1 bits (216), Expect = 6e-19
Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +1
Query: 124 DLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKR-RLN 300
D+P++ EYAK+ R++CK CK I + SLR+A MVQ PNW H CFFKK+ +
Sbjct: 30 DVPFKTEYAKSNRSSCKSCKSNIGKDSLRVARMVQ-------VPNWFHFSCFFKKQFKPK 82
Query: 301 SFTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKD 480
S EIA + L+ +DQ++ + + A V P D
Sbjct: 83 SLAEIAGIDGLRWDDQEKFRAQVYGGASDV-------PDTTAAATVSVEQP--------D 127
Query: 481 FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYG 603
EY+KSSR+TC C+ +I K E+R+ K++ G KYG
Sbjct: 128 LLAEYAKSSRSTCKHCDEQIVKGELRLAKVM----DGEKYG 164
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 142 EYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFK 285
EYAK+ R+ CK C ++I +G LR+A ++ + G P WHH CF K
Sbjct: 131 EYAKSSRSTCKHCDEQIVKGELRLAKVMDGEKY-GPVPKWHHVPCFLK 177
>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
Length = 1311
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Frame = +1
Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFD--GKQPNWHHEDCFFKK------ 288
+ VEYA GRA CKGCK++I++ S RIA + + F + G W+H C F
Sbjct: 12 FLVEYAPQGRAKCKGCKEQIEKSSARIAKLAPNPFSEDGGLMKQWYHVKCIFDSFSRARA 71
Query: 289 --RRLNSFTEIANFNVLKNEDQKRIKTTIENSAGAVVMP 399
+++ ++ F +K +DQ IK I +G V P
Sbjct: 72 TTKKIEDAEDLDGFVDMKQDDQNTIKQLISGLSGKKVSP 110
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 472 LKDFKVEYSKSSRATCPECEIKICKDEIRICKI 570
LK F VEY+ RA C C+ +I K RI K+
Sbjct: 9 LKSFLVEYAPQGRAKCKGCKEQIEKSSARIAKL 41
>SB_10139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 257 FGCFPSKKADCTITAMRSEP*SIFCLQPLQAALPVFAYST*YGKSAIFLQF--CY 99
F C PSK+ T R E C+Q + + +P + + G S FL F CY
Sbjct: 4 FACLPSKEKSSAFTPFRMETTGNNCVQEISSPMPFYQTHSPPG-SPHFLPFPPCY 57
>SB_49399| Best HMM Match : DUF1366 (HMM E-Value=8.1)
Length = 155
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 169 CKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNSFTEIANFNVLKNEDQ 348
CKG K+ + + ++ + F GK+P + + N +TE N L +ED
Sbjct: 79 CKGVKRAVVKKTISLDNYKDCLF--GKEPQMRMMNVI-RSHGHNVYTETVNKRALSHEDD 135
Query: 349 KRI 357
KRI
Sbjct: 136 KRI 138
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 169 CKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNSFTEIANFNVLKNEDQ 348
CKG K+ + + S+ F GK+P + + N +TE N L +ED
Sbjct: 1182 CKGVKRAVVKKSIGFDDYKDCLF--GKEPQMRMMNVI-RSHGHNVYTETVNKRALSHEDD 1238
Query: 349 KRI 357
KRI
Sbjct: 1239 KRI 1241
>SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 169 CKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNSFTEIANFNVLKNEDQ 348
CKG K+ + + ++ + F GK+P + + N +TE N L +ED
Sbjct: 131 CKGVKRAVVKKTISLDNYKDCLF--GKEPQMRMMNVI-RSHGHNVYTETVNKRALSHEDD 187
Query: 349 KRI 357
KRI
Sbjct: 188 KRI 190
>SB_56804| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 345
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 392 TTAPALFSIVVFILFWSSFLSTLKFAISVKLFKRRFLK 279
TT PAL S+ ++ + S+F++ + + + + F+R F +
Sbjct: 268 TTDPALISVSKWLHYCSTFINPIIYTLLTRGFRRAFTR 305
>SB_32593| Best HMM Match : CXCXC (HMM E-Value=6.3)
Length = 265
Score = 27.9 bits (59), Expect = 6.8
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +1
Query: 121 ADLPYQVEYAK---TGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKR 291
AD P Q E+ K G+ AC+ CK + Q SL++ + ++ G N H ++KR
Sbjct: 72 ADHPGQCEFGKYLNQGKCACRRCKM-VGQQSLQL-----THYYYG--DNRFHARHPWEKR 123
Query: 292 RLNSFTEIANFNVLKNEDQKRIKTTIENSAGAVVMPI 402
+ + E + F L NE++ ++ + + G PI
Sbjct: 124 DVTA--EESTFYDLDNENRVSVRKKLSSQEGFTGTPI 158
>SB_22551| Best HMM Match : TNFR_c6 (HMM E-Value=6.1)
Length = 234
Score = 27.9 bits (59), Expect = 6.8
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +1
Query: 121 ADLPYQVEYAK---TGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKR 291
AD P Q E+ K G+ AC+ CK + Q SL QS + N+H ++KR
Sbjct: 56 ADHPGQCEFGKYLNQGKCACRRCKM-VGQQSL------QSTHYYYGDNNFHARHP-WEKR 107
Query: 292 RLNSFTEIANFNVLKNEDQKRIKTTIENSAGAVVMPI 402
+ + E + F L NE++ ++ + + G PI
Sbjct: 108 DVTA--EESTFYDLDNENRVSVRKKLSSQEGFTGTPI 142
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 71 FIKRTLEVIHNRIAKKWQTCHIKL---NTQRQVEQPVRVVNKKLIK 199
FIK +L+V + KKW IKL +R++++ R K+ K
Sbjct: 557 FIKHSLQVHEKQCLKKWDAAKIKLEKEEKERRLKKTERASRKQTAK 602
>SB_5494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 392 TTAPALFSIVVFILFWSSFLSTLKFAISVKLFKRRFLK 279
TT PAL S+ ++ + S+F++ + + + + F+R F +
Sbjct: 268 TTDPALISVSKWLHYCSTFINPIIYTLLTRGFRRAFTR 305
>SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39)
Length = 621
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 98 HNRIAKKWQTCHIKLNTQRQVEQP-VRVVNKKLIK 199
H + ++W CH+K T ++QP +R+ K+ +K
Sbjct: 170 HLEVFRQWFDCHLKGKTNGAMQQPNLRIYMKQGVK 204
>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 180 TTLTGCSTCLCVFNLIWQVCHFFAILLCITSNVLF 76
T C TC F++ +CH +++++ + S+V+F
Sbjct: 755 TCSASCITCTATFHVSSVMCHLYSVIIHV-SSVMF 788
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,498
Number of Sequences: 59808
Number of extensions: 298536
Number of successful extensions: 932
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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