Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02f
         (608 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribos...   158   6e-39
BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p pro...   158   6e-39
AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E prote...   158   6e-39
AF051548-1|AAC24518.1|  994|Drosophila melanogaster poly(ADP-rib...   158   6e-39

>D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribose)
           polymerase protein.
          Length = 994

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/161 (51%), Positives = 102/161 (63%)
 Frame = +1

Query: 124 DLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNS 303
           +LPY  EYA+TGRA CKGCK  I + +LRIAVMVQSAF D K PNW H+ CFFK +R +S
Sbjct: 4   ELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCFFKNQRPSS 63

Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
             +I N   L+  DQK +   +EN        IQE               ++ N ALKDF
Sbjct: 64  VGDIQNIGNLRFADQKELTDLVEN--------IQE----VISAQLGKKRSKAFNLALKDF 111

Query: 484 KVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 606
            +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGG
Sbjct: 112 GIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGG 152



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +1

Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMV---QSAFFDGKQPNWHHEDCFFKKR-RLN 300
           + +EYAK+ R+ C+GC+QKI++  +R+   V   +     G QP WHH +CF + R  L 
Sbjct: 111 FGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRSELG 170

Query: 301 SFT---EIANFNVLKNEDQKRIKTTI 369
            F    ++  F  L ++DQ ++K  I
Sbjct: 171 WFASGEDMPGFQSLADDDQAKVKNAI 196


>BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p
           protein.
          Length = 994

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/161 (51%), Positives = 102/161 (63%)
 Frame = +1

Query: 124 DLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNS 303
           +LPY  EYA+TGRA CKGCK  I + +LRIAVMVQSAF D K PNW H+ CFFK +R +S
Sbjct: 4   ELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCFFKNQRPSS 63

Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
             +I N   L+  DQK +   +EN        IQE               ++ N ALKDF
Sbjct: 64  VGDIQNIGNLRFADQKELTDLVEN--------IQE----VISAQLGKKRSKAFNLALKDF 111

Query: 484 KVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 606
            +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGG
Sbjct: 112 GIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGG 152



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +1

Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMV---QSAFFDGKQPNWHHEDCFFKKR-RLN 300
           + +EYAK+ R+ C+GC+QKI++  +R+   V   +     G QP WHH +CF + R  L 
Sbjct: 111 FGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRSELG 170

Query: 301 SFT---EIANFNVLKNEDQKRIKTTI 369
            F    ++  F  L ++DQ ++K  I
Sbjct: 171 WFASGEDMPGFQSLADDDQAKVKNAI 196


>AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E protein
           protein.
          Length = 613

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/161 (51%), Positives = 102/161 (63%)
 Frame = +1

Query: 124 DLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNS 303
           +LPY  EYA+TGRA CKGCK  I + +LRIAVMVQSAF D K PNW H+ CFFK +R +S
Sbjct: 4   ELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCFFKNQRPSS 63

Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
             +I N   L+  DQK +   +EN        IQE               ++ N ALKDF
Sbjct: 64  VGDIQNIGNLRFADQKELTDLVEN--------IQE----VISAQLGKKRSKAFNLALKDF 111

Query: 484 KVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 606
            +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGG
Sbjct: 112 GIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGG 152



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +1

Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMV---QSAFFDGKQPNWHHEDCFFKKR-RLN 300
           + +EYAK+ R+ C+GC+QKI++  +R+   V   +     G QP WHH +CF + R  L 
Sbjct: 111 FGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRSELG 170

Query: 301 SFT---EIANFNVLKNEDQKRIKTTI 369
            F    ++  F  L ++DQ ++K  I
Sbjct: 171 WFASGEDMPGFQSLADDDQAKVKNAI 196


>AF051548-1|AAC24518.1|  994|Drosophila melanogaster
           poly(ADP-ribose) polymerase protein.
          Length = 994

 Score =  158 bits (383), Expect = 6e-39
 Identities = 83/161 (51%), Positives = 102/161 (63%)
 Frame = +1

Query: 124 DLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLNS 303
           +LPY  EYA+TGRA CKGCK  I + +LRIAVMVQSAF D K PNW H+ CFFK +R +S
Sbjct: 4   ELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCFFKNQRPSS 63

Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
             +I N   L+  DQK +   +EN        IQE               ++ N ALKDF
Sbjct: 64  VGDIQNIGNLRFADQKELTDLVEN--------IQE----VISAQLGKKRSKAFNLALKDF 111

Query: 484 KVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 606
            +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGG
Sbjct: 112 GIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGG 152



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +1

Query: 133 YQVEYAKTGRAACKGCKQKIDQGSLRIAVMV---QSAFFDGKQPNWHHEDCFFKKR-RLN 300
           + +EYAK+ R+ C+GC+QKI++  +R+   V   +     G QP WHH +CF + R  L 
Sbjct: 111 FGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRSELG 170

Query: 301 SFT---EIANFNVLKNEDQKRIKTTI 369
            F    ++  F  L ++DQ ++K  I
Sbjct: 171 WFASGEDMPGFQSLADDDQAKVKNAI 196


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,481,974
Number of Sequences: 53049
Number of extensions: 433798
Number of successful extensions: 1165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)