Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02f
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    68   6e-12
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    68   6e-12
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    36   0.023
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
 Frame = +1

Query: 127 LPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKK----RR 294
           LPY +EYAK+GR+ CK CK+ I    LR+++   S FFDG   +W H +CF+ K    R 
Sbjct: 8   LPYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIRGRD 67

Query: 295 LNSFTEIANFNVLKNEDQKRIKTTIEN 375
             + + I   + L+ EDQ++++  I++
Sbjct: 68  DINISSIRGVDWLRWEDQEKLRQEIQH 94


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
 Frame = +1

Query: 127 LPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKK----RR 294
           LPY +EYAK+GR+ CK CK+ I    LR+++   S FFDG   +W H +CF+ K    R 
Sbjct: 8   LPYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIRGRD 67

Query: 295 LNSFTEIANFNVLKNEDQKRIKTTIEN 375
             + + I   + L+ EDQ++++  I++
Sbjct: 68  DINISSIRGVDWLRWEDQEKLRQEIQH 94


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
 Frame = +1

Query: 142 EYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPN--------WHHEDCFFK---K 288
           +YAK   A C+ CK ++++G LR+  ++ + F   K P+        + H +C F+   K
Sbjct: 12  DYAKRV-AKCQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHTNCLFEMLFK 70

Query: 289 RR-----LNSFTEIANFNVLKNEDQKRIKTTIENSA 381
            R     ++   EI  F  L  EDQ  IK  ++  A
Sbjct: 71  ARPTTKVIDETDEIEGFEDLNAEDQDEIKKLVDELA 106


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 496 SKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 606
           + S  A CP+CE+ +   E R+C   + T  GM   G
Sbjct: 827 TSSQEAICPKCEMSLSTVE-RVCSDAWKTANGMAEDG 862


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,806
Number of Sequences: 27780
Number of extensions: 246055
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)