Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e02f
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 93 1e-19
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest... 63 1e-10
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest... 60 9e-10
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 29 3.2
At1g11220.1 68414.m01285 expressed protein contains similarity t... 28 5.6
At4g18290.1 68417.m02714 inward rectifying potassium channel (KA... 27 7.4
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 27 7.4
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport... 27 9.7
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 27 9.7
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 93.1 bits (221), Expect = 1e-19
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 130 PYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKK-RRLNSF 306
P++ EYAK+ R++CK CK I++ + R+ +VQS FDG P W+H C KK +++ S
Sbjct: 7 PWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKTKQIKSV 66
Query: 307 TEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDFK 486
++ L+ EDQ++I+ +E+ AG+ + N+A ++
Sbjct: 67 DDVEGIESLRWEDQQKIRKYVESGAGS-----------NTSTSTGTSTSSTANNAKLEYG 115
Query: 487 VEYSKSSRATCPECEIKICKDEIRI 561
+E S++SRA C +C KI K E+RI
Sbjct: 116 IEVSQTSRAGCRKCSEKILKGEVRI 140
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/136 (22%), Positives = 51/136 (37%)
Frame = +1
Query: 121 ADLPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCFFKKRRLN 300
A L Y +E ++T RA C+ C +KI +G +RI + G WHH CF +
Sbjct: 110 AKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEMSSST 167
Query: 301 SFTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKD 480
++ + + + DQ+ + ++ + A E DN K
Sbjct: 168 ELESLSGWRSIPDSDQEALLPLVKKALPAAKTETAEARQTNSRAGTKRKNDSVDNEKSKL 227
Query: 481 FKVEYSKSSRATCPEC 528
K + S+ C
Sbjct: 228 AKSSFDMSTSGALQPC 243
Score = 35.1 bits (77), Expect = 0.037
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 475 KDFKVEYSKSSRATCPECEIKICKDEIRICKILYDT 582
K ++ EY+KSSR++C C+ I K+ R+ K++ T
Sbjct: 6 KPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQST 41
>At3g14890.1 68416.m01882 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 694
Score = 63.3 bits (147), Expect = 1e-10
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Frame = +1
Query: 127 LPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCF-FKKRRLNS 303
+P EYAK+ R++C+ C KI SLR+ ++ WHH DCF + S
Sbjct: 48 MPVVAEYAKSNRSSCRSCSNKIAVKSLRLG-LISKGRGGVDMTRWHHFDCFPTDSESIAS 106
Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
+I + L+ EDQ + +E G V P ++ P+ A
Sbjct: 107 VDDIQGLSALEKEDQDALTKLVE-QCGKV--PAKKPDEKKGKAKKHIMGPKGLTKAATSS 163
Query: 484 KV--EYSKSSRATCPECEIKICKDEIRICKILYDT 582
KV + +KSSR++C C I ++R+ + D+
Sbjct: 164 KVIADNAKSSRSSCNRCSQTIVSKDLRVGLVTEDS 198
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 142 EYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDCF-FKKRRLNSFTEI 315
EYAK+ R+ CK C Q I LR+ ++ ++ FD KQ WHH CF + S +I
Sbjct: 331 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDMKQ--WHHLGCFPVDSDPIVSVEDI 388
Query: 316 ANFNVLKNEDQKRIKTTIE 372
F+ L++ DQ +K ++
Sbjct: 389 GGFSELQSGDQDALKELVQ 407
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 490 EYSKSSRATCPECEIKICKDEIRI 561
EY+KSSR+TC +C I E+R+
Sbjct: 331 EYAKSSRSTCKKCSQTIAAKELRL 354
>At3g14890.2 68416.m01883 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 638
Score = 60.5 bits (140), Expect = 9e-10
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +1
Query: 127 LPYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCF-FKKRRLNS 303
+P EYAK+ R++C+ C KI SLR+ ++ WHH DCF + S
Sbjct: 1 MPVVAEYAKSNRSSCRSCSNKIAVKSLRLG-LISKGRGGVDMTRWHHFDCFPTDSESIAS 59
Query: 304 FTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQEXXXXXXXXXXXXXXPESDNSALKDF 483
+I + L+ EDQ + +E G V ++ P+ A
Sbjct: 60 VDDIQGLSALEKEDQDALTKLVE-QCGKVPAK-KQPDEKKGKAKKHIMGPKGLTKAATSS 117
Query: 484 KV--EYSKSSRATCPECEIKICKDEIRICKILYDT 582
KV + +KSSR++C C I ++R+ + D+
Sbjct: 118 KVIADNAKSSRSSCNRCSQTIVSKDLRVGLVTEDS 152
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 142 EYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDCF-FKKRRLNSFTEI 315
EYAK+ R+ CK C Q I LR+ ++ ++ FD KQ WHH CF + S +I
Sbjct: 275 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDMKQ--WHHLGCFPVDSDPIVSVEDI 332
Query: 316 ANFNVLKNEDQKRIKTTIE 372
F+ L++ DQ +K ++
Sbjct: 333 GGFSELQSGDQDALKELVQ 351
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 490 EYSKSSRATCPECEIKICKDEIRI 561
EY+KSSR+TC +C I E+R+
Sbjct: 275 EYAKSSRSTCKKCSQTIAAKELRL 298
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 107 IAKKWQTCHIKLNTQRQVEQPVRVVNKKLIKA 202
I+ KWQ C + T+ +VEQ + + +KL+ A
Sbjct: 172 ISGKWQPCLPEHYTEEKVEQLIETLPRKLVNA 203
>At1g11220.1 68414.m01285 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 310
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 374 FSIVVFILFWSSFLSTLK 321
FS+ F +FWSSFLS LK
Sbjct: 34 FSVSRFPIFWSSFLSWLK 51
>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2)
identical to inward rectifying K+ channel [Arabidopsis
thaliana] gi|12666980|emb|CAC28122; Shaker-type channel
(1P/6TM), PMID:11500563
Length = 697
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 538 F*FHIQDTWPYCFLNIQL 485
F FH Q+ +PYC NIQ+
Sbjct: 600 FEFHSQEAYPYCRSNIQI 617
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 475 SAQSYLILGRLSCYVYLCLWFWFL 404
S + YLI ++C V +C W WF+
Sbjct: 209 SERYYLINIVVACMVLMCFWSWFV 232
>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
(POT) family protein low similarity to SP|P46032 Peptide
transporter PTR2-B (Histidine transporting protein)
{Arabidopsis thaliana}; contains Pfam profile PF00854:
POT family
Length = 521
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 456 FWGGSLVTFTFAFGFGFL 403
FW L T F+FGFGFL
Sbjct: 62 FWMLCLSTLAFSFGFGFL 79
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 256 NWH-HEDCFFKKRRLNSFTEIANFNVLKNEDQK 351
N H H C K ++N+ + FN+LK +Q+
Sbjct: 311 NHHFHSTCIVKWLKMNATCPLCKFNILKGNEQE 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,613
Number of Sequences: 28952
Number of extensions: 208088
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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