Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d23r
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.4  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 528 KAEGDYTFPISDIFSASGTVAHLALEGASNVVVND 424
           + E D T  +SDI  A+  V     EGA   +V++
Sbjct: 263 RGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 586 HRSHHFRYPRAWTRPNLHRKSRRRL 512
           H+ ++++ PRA  R + H   RRRL
Sbjct: 541 HKQYYWKKPRARPRSSGHSSRRRRL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,180
Number of Sequences: 5004
Number of extensions: 47520
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)