Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d23r
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    33   0.31 
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         32   0.41 
SB_12770| Best HMM Match : MH1 (HMM E-Value=0)                         30   1.7  
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)           29   3.9  
SB_18122| Best HMM Match : F5_F8_type_C (HMM E-Value=4e-32)            29   5.1  
SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)               28   6.7  
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)                  28   8.9  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 28   8.9  
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -2

Query: 396  FSVDLTLPKLSASSVAVNGEATIFGR---ELAVASSGSLVVEDLRLVSTVSIRLLPSISI 226
            F+ D  +P+L++ ++ +N + +  G+     +  S   +V ED + +S V I L  SIS 
Sbjct: 1837 FAFDYGIPRLTSDTITLNVDGSAAGQLPPRFSKVSYHFMVSEDAKYLSLVGIILARSISG 1896

Query: 225  RELSAVLTVGNV 190
              L   +  GNV
Sbjct: 1897 ARLDYKIVSGNV 1908


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
 Frame = -2

Query: 381  TLPKLSASSVAVNGEATIFGRELAVASSGS-----LVVEDLRLVSTVSIRLLPSISIREL 217
            T P    + V++ G+AT+   +L V  +G+     L+V   R+ STV + +  + S  +L
Sbjct: 816  TCPARLKNRVSIKGQATLVIADLTVQDTGTYGCSLLLVTGKRIDSTVKLVVTGNDSTVKL 875

Query: 216  -------SAVLTVGNVESALKVVLFGEDVSERLNDALNNKLPELLETYND 88
                   +  L V   +S +K+V+ G D + +L    N+   +L+ T ND
Sbjct: 876  VVTGNDSTVKLVVTGNDSTVKIVVTGNDSTVKLVVTGNDSTVKLVVTGND 925


>SB_12770| Best HMM Match : MH1 (HMM E-Value=0)
          Length = 376

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 649 PSKVDLEREKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLHFPNF 497
           PSK  +  ++T  GR   CER    H  Y R W  P++ +   + L F  F
Sbjct: 77  PSKC-VTIQRTLDGRLQVCERKGFPHVIYARLWRWPDIQKMEMKHLDFCRF 126


>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = -2

Query: 471 VAHLALEGASNVVVNDVTFNILRSKF--SVDLTLPKLSASSV--AVNGEATIFGRELAVA 304
           VA++ + GAS ++ ++     + + +   V   +P   A+S   AVNG     GR L VA
Sbjct: 332 VAYITVLGASGILESEAVAVSVGNMYLGPVKWIVPLFVAASTFGAVNGMVLTNGRLLYVA 391

Query: 303 SSGSLVVEDLRLVSTVSIRLLPSISIRELSAVL 205
           +  +L+   L ++       LPS+    L +V+
Sbjct: 392 ARDNLMPSLLAMIHVKRFTPLPSLLFTTLVSVI 424


>SB_18122| Best HMM Match : F5_F8_type_C (HMM E-Value=4e-32)
          Length = 455

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 603 ARPNSVFSLSRSTFEGTAATLAARVTSTNAKTFXV 707
           A P+ VFS+S +T+E T   L   +TS + + + +
Sbjct: 34  AEPHKVFSVSGNTYEATKHELVFPITSRHVRLYPI 68


>SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/76 (26%), Positives = 27/76 (35%)
 Frame = -1

Query: 724 LVSKKSTMKXXXXXXXXXXXXXXXVPSKVDLEREKTEFGRAIDCERHRSHHFRYPRAWTR 545
           LV K    K                PSK  +  ++T  GR     R    H  Y R W  
Sbjct: 38  LVKKLKEKKDELDSLITAITSAGTHPSKC-VTIQRTLDGRLQVAGRKGFPHVIYARIWRW 96

Query: 544 PNLHRKSRRRLHFPNF 497
           P+LH+   R + +  F
Sbjct: 97  PDLHKNELRHVKYCQF 112


>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 336 ATIFGRELAVASSGSLVVEDLRLVSTVSIRLLPSISIRELSAVLTVG--NVESALKVVLF 163
           A+  GR+ A+  +GSL  E  + +    ++LL  +  +    VL  G  N++ A+   + 
Sbjct: 228 ASYHGRQNAIGGNGSLTDEKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVV 287

Query: 162 GEDVSERLN 136
            E V ER N
Sbjct: 288 TEVVQERSN 296


>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
          Length = 525

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = -2

Query: 369 LSASSVAVNGEATIFGRELAVASSGSLVVEDLRLVS---TVSIRLLPSISIRELS-AVLT 202
           LSASSV    E    G   AV ++G  VV+ L LV+   T   +L   + + +LS  +L+
Sbjct: 318 LSASSVLEEPEEVTLGDGYAVEAAGKGVVK-LELVADGETKKCKLHDVLYVPKLSYNLLS 376

Query: 201 VGNVESALKVVLFGE 157
           V  V +A K V F E
Sbjct: 377 VSRVTNAGKAVEFNE 391


>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 304 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAE 396
           G  + P K+ G+ V+GD   AELGE   D E
Sbjct: 19  GVKEMP-KENGVLVNGDATAAELGEEDDDEE 48


>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
          Length = 129

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 289 KASTTGYSQFPAKDGGLTVDGDRRGAELGEGK 384
           K  T G   FPA+DGGL V     G   G+ K
Sbjct: 52  KEQTNGRLDFPARDGGLLVVMTMSGRGKGKAK 83


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 291 LVVEDLRLVSTVSIRLLPSISIRELSAVLTVGNVESALKVV 169
           L++ DLRL  T + + +   +I E+ +    GNVESA+  V
Sbjct: 438 LMINDLRLADTHTWKYVNDTTIAEIVSRGFPGNVESAVSAV 478


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 73  NLPDLVVVSF-EKFWKFVI-QSVIQPLGYVLAEENNFESGLNIANSKNGTELPNAD 234
           NL D+ +  F  K+ K +  QS+  PLG +  +EN  E  L+I    +G  LP+ D
Sbjct: 246 NLKDVCIKHFPHKYIKELAEQSIKVPLGVIFKDENTNEDMLHILQQFHG-YLPHLD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,365,620
Number of Sequences: 59808
Number of extensions: 374177
Number of successful extensions: 1120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)