Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d22f
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.40 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   1.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.8  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   2.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   2.8  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   6.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   6.5  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   6.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   8.6  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   8.6  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 348 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 458
           I+ N P+  A+ P+  E + EEPLP    LP    PE
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 389 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS-RSDGDGLVGV 213
           NG S +       ++D+   S +   D    +FN+ R  R     VN   RSD D L+G+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRE-RFLTEHVNMDERSDDDFLLGL 252

Query: 212 NKSRSNRDGH 183
             S S+ D H
Sbjct: 253 ISSDSSVDDH 262


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = -3

Query: 506 FGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGS 327
           FG +  G L G RN      G+G   + G  +FG   N     G    T      L  GS
Sbjct: 59  FGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ-SNTPAFGGTNNATNPSGGGL-FGS 116

Query: 326 AISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVG--VNKSRSNRDGHVGVNKSRSN 156
             +  +++ GT  +  SN  G  G   S+  G GL G     + +N  G  G   S +N
Sbjct: 117 NTANNNANTGTSFSFGSNA-GSTGFG-SQGTGGGLFGSSTTPATTNAFGTSGFVSSNAN 173



 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 366  SEIAADPVDVEDIAEE 413
            + +AAD +D+EDI+EE
Sbjct: 1084 ASLAADNMDIEDISEE 1099


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 228 ISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIII 350
           +S G  + D + P   G A++  A   V+GAD  P++  ++
Sbjct: 164 VSSGGVMADLWCPAQRGTALIFYAFFVVSGADFGPIISSLV 204


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 455 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSA 324
           R+YG  G N +    L   ++N  + G   +L RTV+V+ D+DE  A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 354 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 449
           ++ P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 359 VHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGD 228
           +HVD +  +GSA+          +  R++ DGL  VN + + G+
Sbjct: 248 LHVDHETGDGSAVGRAILLDDVIDRLRNSPDGLENVNITFNIGE 291


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 321 DGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFP 455
           DG P  +     + P+E    P +   IA  P+P ++    P  P
Sbjct: 524 DGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTP 568


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 323 ISAGDSHRGTFNNGRSNRDGLVGVNKSRS----DGDGLVGVNKS 204
           +  GD  +GTF+ G+    G V +   R+    DG  LV V+KS
Sbjct: 100 VDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPVDKS 143


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 477 RVQERRFQEIREWGE*QLRAKALRQCPQHQRDQRQSRK 364
           R QER  ++IRE  + + + K L+   + +R +R++ +
Sbjct: 582 RKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAER 619


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 325 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPTEMG 146
           P+AP +    P+T  G  +        + PTE  S  +T A P    T  +  A  T  G
Sbjct: 312 PTAPNSAFTKPATSTGDNKPTFSFGNTSKPTENTSTTATSAPPLSNNTKPAEGANQTSSG 371


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 321 DGTPLVQIIINVNRPSEIAADPVDVEDIAEE 413
           D   L+Q++ N N PS  AA  V  +   E+
Sbjct: 383 DSAQLIQLVENRNNPSVAAASNVAADQSTED 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,869
Number of Sequences: 5004
Number of extensions: 32434
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)