Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d22f
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.26 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.60 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.60 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.60 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 329 SAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 189
           S I+AG+++    NN  +N +     N +  +G+G  G + + +N D
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNG-NGASNNNNNGD 271


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 105 NNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 105 NNNYNKKLYYNIINIEQI 122


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 325 NNNYNKKLYYNIINIEQI 342


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 467 NVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           N ++  Y +  N N+ +  + N++NI  I
Sbjct: 95  NNNYNNYNNNYNTNYKKLQYYNIINIEQI 123


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 479 HGFRNVDFRKYGSGENNNFGQRLFGNVLNINGI 381
           + ++  ++  Y +  N N+ +  + N++NI  I
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 334  RGVPSAPVTVTGAPSTMAGP 275
            R VPSA + V   P   AGP
Sbjct: 990  RSVPSAELIVRTEPQRPAGP 1009


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 334  RGVPSAPVTVTGAPSTMAGP 275
            R VPSA + V   P   AGP
Sbjct: 986  RSVPSAELIVRTEPQRPAGP 1005


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 165 ALVDTYVPISVGPALVDTYEPISV 236
           ++V T++ +   PAL D  +PI +
Sbjct: 497 SIVGTFIILCEAPALRDNTKPIDM 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,311
Number of Sequences: 438
Number of extensions: 2700
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)