Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d22f
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 33 0.11
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 31 0.34
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 31 0.45
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 29 1.8
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.4
At1g66400.1 68414.m07541 calmodulin-related protein, putative si... 29 2.4
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 4.2
At1g30780.1 68414.m03763 F-box family protein 28 4.2
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 5.5
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 5.5
At5g37540.1 68418.m04521 aspartyl protease family protein weak s... 27 7.3
At4g28080.1 68417.m04027 expressed protein 27 7.3
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 27 7.3
At1g66220.1 68414.m07516 subtilase family protein contains simil... 27 9.6
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 9.6
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 129 LVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGP---AIVEGA 299
L T P+ V A V +P++ P P+S + +P+SVGP A V+
Sbjct: 242 LPQTQSPVKVDRATVAPSIPVTGQPPA-----PVSSANGPIQNRQPVSVGPVPTATVKVE 296
Query: 300 PVTVTGADGTPLVQIIINVNRPS 368
P TVT P I V RP+
Sbjct: 297 PSTVTSMAPVPSFPHIPAVARPA 319
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +3
Query: 246 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPE 425
L T P+ V A V + + VTG P+ + ++ PV + EP
Sbjct: 242 LPQTQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTV 300
Query: 426 VVILPTPVFPEI 461
+ P P FP I
Sbjct: 301 TSMAPVPSFPHI 312
Score = 27.1 bits (57), Expect = 7.3
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +3
Query: 108 PISVGPALVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAI 287
P+ V A V P++ P P+S + +P+SVGP T + V P+
Sbjct: 248 PVKVDRATVAPSIPVTGQPP-----APVSSANGPIQNRQPVSVGPVPTAT---VKVEPST 299
Query: 288 VEG-APVTV---TGADGTPLVQII--INVNRPSEIAADPVDVEDIAEEPLPEVVILPTP 446
V APV A P Q I I + S ++ D V + A + P VV TP
Sbjct: 300 VTSMAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTP 358
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 31.5 bits (68), Expect = 0.34
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -3
Query: 314 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGV 135
G + RG+ G S R G KS SDG G+ G +K H GV ++S D V
Sbjct: 24 GSAVRGSGRGGESGRGRGPGRVKSESDG-GIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82
Query: 134 N 132
N
Sbjct: 83 N 83
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 350 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRS 237
DDD DE +SA S + F N S+RDG + +KS+S
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDG-INNSKSKS 480
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 183 VPISVGPALVDTYE-PISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 359
VP+S G + P +GP + P GP+ E VTV G DG P +N
Sbjct: 140 VPVSEGGVISSPSSYPWPLGPREGSAFSP---GPSPSEITSVTVPGKDGVPF------IN 190
Query: 360 RPSEIAADPVDVEDIAEEPLP 422
+ DV+ + PLP
Sbjct: 191 SNPAVPLPTGDVDSTSINPLP 211
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 347 DDLDEGSAIS-AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 171
DD GS + DS G +N DG G N + ++ + N +N D + G N
Sbjct: 47 DDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNN-----NNGNNNNDNNNGNN 101
Query: 170 KSRSNRDGFVGVNKSRSNGDG 108
K +N G N + +N +G
Sbjct: 102 KDNNNN----GNNNNGNNNNG 118
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = -3
Query: 338 DEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRS 159
D S S ++ NNG +N D N ++ D G NK +N + N +
Sbjct: 60 DSQSPPSPQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118
Query: 158 NRDGFVGVNKSRSNGD 111
N + G N + +N D
Sbjct: 119 NDNN--GNNNNGNNND 132
>At1g66400.1 68414.m07541 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
from SP:P25070 [Arabidopsis thaliana]; contains Pfam
profile: PF00036 EF hand (4 copies)
Length = 157
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 344 DLDEGSAISAGDSHRGTFNNGR--SNRDGLVGVNKSRSDGDGLV 219
DLD ISA + H N G S +D +NK SDGDG V
Sbjct: 99 DLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCV 142
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 398 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 264
+N+N S + T ++ DL G + S GDS+ NN S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 384 PVDVEDIAEEPLPEVVILPTPVFPEID 464
P D+ +A PLP+V +LP P FP+ +
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFE 100
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.5 bits (58), Expect = 5.5
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Frame = -3
Query: 440 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 264
G NN+ L G V +N+ G++G L RTV I G RG GR R
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTV----------VIQQGGGGRGRVRGGRGGRGP 218
Query: 263 LVGVNK----SRSDGDGLVGVNKS-RSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 111
V++ G G+ G R+ G+ G + +G V KS ++ D
Sbjct: 219 APTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLD 274
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 389 NGISGNLGRTVHVDDDLDEGSAISAGDS 306
NG G LG+ H++D + ++++AG+S
Sbjct: 68 NGSKGKLGKAAHLEDWITTITSLTAGES 95
>At5g37540.1 68418.m04521 aspartyl protease family protein weak
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Prosite
PS00141: Eukaryotic and viral aspartyl proteases active
site; contains 1 predicted transmembrane domain
Length = 442
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -3
Query: 296 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNK------SRSNRDG 147
TF+N ++ ++G K +D G++G+N R + ++K +RSNR G
Sbjct: 183 TFSNSQTTPPLILGCAKESTDEKGILGMNLGRLSFISQAKISKFSYCIPTRSNRPG 238
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 362 TVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 249
TVH DDD DEG + + F++GR R L +N
Sbjct: 1078 TVHEDDDSDEGWQEAV---PKNRFSSGRRTRPSLAKLN 1112
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +3
Query: 198 GPALVDT-YEPISVGPALVDTYEPI-----SVGPAIVEGAPVTVTGADGTPLVQIII 350
GP V T +EPI V ++ P+ +GPA+ G V + A+ TPL +++
Sbjct: 181 GPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLV 237
>At1g66220.1 68414.m07516 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]; contains Pfam profiles: PF00082 Subtilase
family (3 copies)
Length = 753
Score = 26.6 bits (56), Expect = 9.6
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +3
Query: 99 KYEPISVGPALVDTYEPISVGPALVDTYVPISVGPALVD----TYEPISVGPALVDTYEP 266
+Y+ S+ L TY S P+++D +P P+L T +VGPA Y P
Sbjct: 624 EYDDDSISKLLGKTYNCTSPKPSMLDFNLPSITIPSLTGEVTVTRTVRNVGPAR-SVYRP 682
Query: 267 ISVGPAIVEGAPVTVTGADGTPLVQIIINV 356
+ P +E T G+ + +I +V
Sbjct: 683 VIESPLGIELDVKPKTLVFGSNITKITFSV 712
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 413 LFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 267
L G V+ N + + GR+ + D G+ + G S +NNG +N+D
Sbjct: 382 LNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNNGYANQD 430
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,419
Number of Sequences: 28952
Number of extensions: 189090
Number of successful extensions: 682
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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