Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d18r
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...   168   5e-44
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.   161   6e-42
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...   161   6e-42
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...   109   3e-26
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase protein.
          Length = 580

 Score =  168 bits (408), Expect = 5e-44
 Identities = 85/224 (37%), Positives = 125/224 (55%)
 Frame = -1

Query: 682  PVDQTANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWED 503
            P     NWV GNHDN R+A+R+G    D I ML L LPG+ V Y G+EIG+ED + ++++
Sbjct: 341  PNGSVTNWVSGNHDNHRVASRFGRQRGDEIVMLTLTLPGIGVVYNGDEIGMEDRWFTYQE 400

Query: 502  TVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQK 323
            TVDP+GCN   P KY   SRDPERTP+ W+   +AGFS  +KTWLP+ E Y++LN+  QK
Sbjct: 401  TVDPAGCNAG-PAKYYLKSRDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQK 459

Query: 322  ASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHN 143
                SH   +K+LS L+++     G  E   ++  +   KR L +   +V++N       
Sbjct: 460  REYYSHYVAFKSLSYLKKQPVIANGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVT 519

Query: 142  IDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLV 11
            ++LT     +  V  +   V S  + G+     S+ + G    V
Sbjct: 520  VNLTKLHPPADLVVYACNVVGSGLSHGNWIYPASMTIPGSNSAV 563


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score =  161 bits (391), Expect = 6e-42
 Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 1/221 (0%)
 Frame = -1

Query: 682 PVDQTANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWED 503
           P     NWV GNHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWED
Sbjct: 335 PPSGIPNWVPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWED 394

Query: 502 TVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQK 323
           T DP GC       Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K
Sbjct: 395 TQDPQGCGAGKE-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEK 453

Query: 322 ASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEH 146
             + S   ++K  + L++   F+     +  LN ++F F R   D   L  ++N  + E 
Sbjct: 454 KDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQ 513

Query: 145 NIDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 23
            +DL  F NV   + +   + NS        +   +  +GF
Sbjct: 514 IVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score =  161 bits (391), Expect = 6e-42
 Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 1/221 (0%)
 Frame = -1

Query: 682 PVDQTANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWED 503
           P     NWV GNHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWED
Sbjct: 335 PPSGIPNWVPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWED 394

Query: 502 TVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQK 323
           T DP GC       Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K
Sbjct: 395 TQDPQGCGAGKE-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEK 453

Query: 322 ASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEH 146
             + S   ++K  + L++   F+     +  LN ++F F R   D   L  ++N  + E 
Sbjct: 454 KDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQ 513

Query: 145 NIDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 23
            +DL  F NV   + +   + NS        +   +  +GF
Sbjct: 514 IVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score =  109 bits (261), Expect = 3e-26
 Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 6/230 (2%)
 Frame = -1

Query: 682 PVDQTANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWED 503
           P +   NWV+GNHD  R+ TRY     D + ML ++LPGVAVTY GEEIG+ D       
Sbjct: 348 PQNNVPNWVMGNHDRVRVGTRYPGR-ADHMIMLEMILPGVAVTYYGEEIGMVD------- 399

Query: 502 TVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFS-----TADKTWLPMAEGYET-L 341
                    N  I Y    RD  RTPF W+   NAGFS       +K WLP+   Y++ L
Sbjct: 400 ---------NTTI-YKYDVRDGCRTPFQWDNSINAGFSKIAENLLEKNWLPVHTSYKSGL 449

Query: 340 NVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNM 161
           N+E +K    SH  +Y  L+ LR+ +  + G +    LN+ +    R   +    +++N 
Sbjct: 450 NLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINF 509

Query: 160 RDVEHNIDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLV 11
                 +D++   N   N  +   SVNS      T +  ++ + G   ++
Sbjct: 510 SKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSII 559


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 378 LSAVENPAFFSGFQWKGVLSGSLD 449
           +S ++   +F GF W+G+ + +L+
Sbjct: 617 ISEIQKHKWFDGFNWEGLRARTLE 640


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 PGLVSGRESSVFLGVPMERSPFG 439
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 PGLVSGRESSVFLGVPMERSPFG 439
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,421
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)