Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d18f
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 1e-34
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 80 1e-15
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_56875| Best HMM Match : LON (HMM E-Value=0) 30 1.6
SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9) 29 3.7
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 142 bits (345), Expect = 1e-34
Identities = 67/133 (50%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
Frame = +2
Query: 188 DSDGDGIGDLNGITSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEYGTMED 367
DS+GDG GDL+GI S+L+Y+ LGV ++LSPIFKSPMVD GYD+++F +++ +GTMED
Sbjct: 41 DSNGDGNGDLSGIRSRLDYLDYLGVKIIYLSPIFKSPMVDNGYDVSDFMDVNPMFGTMED 100
Query: 368 FEALLKKANELDIKVVLDLVPNHTSNESVWFQEA-LNGNEKYYNYFVWEDGIIDENGNRQ 544
FE+LL+ + +K++LD VPNHTS++ WF E+ N + +++W D D
Sbjct: 101 FESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIWRDAASDGT---- 156
Query: 545 PPNNWLSHFRGSA 583
PPNNWLS F GSA
Sbjct: 157 PPNNWLSVFGGSA 169
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 79.8 bits (188), Expect = 1e-15
Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 1/180 (0%)
Frame = +2
Query: 47 ILLTTMKTVCLLSLLFVACSGIIIKNGEVQDWWETSILYQIYPRSFADSDGDGIGDLNGI 226
++L + ++ ++ C+ +++ + + W E ++Y+I + F + L GI
Sbjct: 619 VILAMIVAAVVIIIVAPKCAKAKVRDMD-KSWLENEVVYKISAQQFNKN-------LTGI 670
Query: 227 TSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDI 406
KL Y++ LGV + + +F + ++++ G MEDF+ LLKKA++ +
Sbjct: 671 IDKLGYLENLGVKVLSIGAVFSEE---------DLQDVNNALGKMEDFQNLLKKAHDRKM 721
Query: 407 KVVLDLVPNHTSNESVWFQE-ALNGNEKYYNYFVWEDGIIDENGNRQPPNNWLSHFRGSA 583
+V++D VPNHTS ++ WF+E ++N N++VW D NNW S GSA
Sbjct: 722 RVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYVWRDS----------ANNWPSMNGGSA 771
>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 308 FGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNGNEK 487
FGY + +F+ YGT ++ L+ A+ I V+LD+V +H + + +G E
Sbjct: 361 FGYQVTSFFAASSRYGTPDELRLLIDTAHSYGIVVLLDIVHSHAAKNVMDGLNQFDGTEG 420
Query: 488 YY 493
Y
Sbjct: 421 CY 422
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = +2
Query: 206 IGDLNGITSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEY--------GTM 361
+G L+ +++L+ ++ G + +PI + Y I + +++ + T
Sbjct: 411 LGPLSQWSARLQISRDSGYNVIHFTPISELGRSHSSYSIVDQLKLNCRFDEPGSKKGATF 470
Query: 362 EDFEALLKKAN-ELDIKVVLDLVPNHTSNESVW 457
+ + +L K E + ++D+V NHT+NE+ W
Sbjct: 471 PEVKKILNKMKTEWKMLSIVDIVLNHTANETEW 503
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 275 LSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLV 427
L P+ ++P+ + Y+I M DF L K+ N+++ K ++DLV
Sbjct: 140 LIPVHRNPVFPRFVKMLEVYQISEFRKNMNDFGPLGKQVNQINDKSLMDLV 190
>SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
Length = 301
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 261 TPNSLIYSNFEVIPFKSPIPSPSLSAKDLG*IWYKIEVSHQS*TSPFFIMIPLHATKSKD 82
T + L+Y + +PF S IP +L KD Y + + S PF IP+ KD
Sbjct: 216 THHYLLYQGYPSLPFISRIPITTLYIKDTH--QYPLYQGYPS--LPFISRIPITTLYIKD 271
Query: 81 SKH 73
+ H
Sbjct: 272 THH 274
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = -1
Query: 559 PIIRWLPI------SIFVYDSVFPNEIIVIFFVAI 473
P++R LPI S+ +YD+ FP E+ +F V I
Sbjct: 969 PVVRELPITNTFSFSVIIYDATFPPEVQNLFSVII 1003
>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 412 CFGSCTKSYIKRKCLVPRSSQWQRK 486
CFGSC+K++IK + L+ ++ QRK
Sbjct: 108 CFGSCSKAFIKLE-LLDNVTEEQRK 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,389,078
Number of Sequences: 59808
Number of extensions: 391471
Number of successful extensions: 1452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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