Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17r
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.5  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   3.3  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   3.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 205 APPN-DAHMESWSRRLADPSVGRSTVEAIRPVLVDW-VNRDRV 327
           APP  D  + + + R  DP+V +   +  +P+ + W +N  R+
Sbjct: 795 APPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILWNINNKRL 837


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 484 PSHAGQTTSACSAVSKSQPQWWHCAIGSLRSD 389
           P H G T      V  S   +WH   G  RSD
Sbjct: 156 PIHPGMTFRYHFNVHNSGTHFWHSHSGFQRSD 187


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 SSCIGSERADSTVPPLWLRL 439
           +SCI +   DS +PPL + L
Sbjct: 355 TSCIPTPNGDSRLPPLEISL 374


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 SSCIGSERADSTVPPLWLRL 439
           +SCI +   DS +PPL + L
Sbjct: 355 TSCIPTPNGDSRLPPLEISL 374


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 184 TLPRIY*APRRGPIS*FCRQHAPPQRWQDEQTQRNP--PPRATIKNPLR 44
           +LPR Y +  RG  +   R    P+  +++QT+RNP   PR +   P R
Sbjct: 198 SLPRQY-SQSRGRHN-QSRSKRQPKTGREDQTRRNPYYRPRTSRTEPPR 244


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 518 ISYFCEEVTAPPLPCGADDERMLRRVQVATTMVALCYRLAPIRCK 384
           ISY   E  APP P     E     V+  + +  L   L   RC+
Sbjct: 721 ISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCE 765


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,036
Number of Sequences: 336
Number of extensions: 4078
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)