Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17r
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    30   0.38 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.2  

>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 539 WKAMLDFCECTI----SXKEAVGRVRDVKAHRRRAWAREADLAQALXLPLIVSXPPHMSV 706
           W+ + +FC+  +    S   A+G   D+ A RRR +A   D A  L     +S  P+M  
Sbjct: 368 WRTVFEFCKALLQFDMSDPYAIGTCIDIYALRRREFAWIIDFANYLENSNKISDTPNMLY 427

Query: 707 S 709
           S
Sbjct: 428 S 428


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 136  FCRQHAPPQRWQDEQTQRNPPPRATIKNPLRNLFFYLNIYVS 11
            F  QH PP+ +       +P  R    NP   +F  L IY+S
Sbjct: 1033 FYIQHPPPKSYLSWSVTFDPQRRRYYINPSGCVFVSLGIYLS 1074


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,002
Number of Sequences: 5004
Number of extensions: 63417
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)