Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d17r
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0764 - 36087823-36088323 34 0.098
06_01_0670 - 4896847-4897470 33 0.23
06_01_0686 - 5016532-5016855,5016921-5017042,5017689-5017763,501... 31 1.2
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 30 1.6
06_03_0220 + 18276641-18276915,18278445-18278676 30 1.6
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827... 30 1.6
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 30 2.1
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 29 2.8
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 29 2.8
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 29 2.8
05_06_0174 - 26149663-26149885,26150353-26151701 29 3.7
05_04_0280 - 19752112-19752451,19754104-19755587 29 3.7
05_03_0517 - 14936085-14936867 29 3.7
09_02_0608 + 11194889-11195134,11195185-11195406 29 4.9
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 29 4.9
07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518 29 4.9
11_06_0611 + 25461469-25461655,25461670-25462238 28 6.4
09_04_0296 + 16461482-16461544,16462087-16463097 28 6.4
06_01_0198 + 1529190-1530371 28 6.4
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 28 6.4
04_01_0442 + 5770019-5771626,5773500-5773571,5774508-5774603,577... 28 6.4
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 28 6.4
01_01_1134 + 8994315-8995892 28 6.4
10_08_0739 + 20217842-20218852 28 8.5
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 28 8.5
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 28 8.5
01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160 28 8.5
>03_06_0764 - 36087823-36088323
Length = 166
Score = 34.3 bits (75), Expect = 0.098
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -3
Query: 576 EMVHSQKSSIAFHDSSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHNGGTVLSARS 397
E V + +SP+ + L+R H GRRR A P P+ GG V+
Sbjct: 80 EQVRRSMDMSLLQEGASPV--VALKRRHSMRAAAAGRRRKSAAPAPADQEGGGGVMELED 137
Query: 396 ---DPMQELTKAIMP 361
D ++EL A P
Sbjct: 138 LGPDYLEELLAASQP 152
>06_01_0670 - 4896847-4897470
Length = 207
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -1
Query: 287 IASTVLRPTEGSASRLDHDSIWASLGGAVRGLWNHIASDLLSATS 153
+ S L PT + R DS A LGG+V LWNH+A ++A S
Sbjct: 151 VRSLPLSPTAAAEVRRYRDS--APLGGSVVRLWNHVAGGGVTAAS 193
>06_01_0686 -
5016532-5016855,5016921-5017042,5017689-5017763,
5018700-5018844
Length = 221
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 435 RNHNGGTVLSARSDPMQELTKAIMPSEHLRRPESEAYSVTIYPIHKD---RANRLDGATT 265
R+ +GG +L DP L K+ +P P + ++ + P KD ++++D A +
Sbjct: 22 RHPDGGFILETFRDPSISLPKSALPPRSAFFPPDQGATIAVSPFVKDTQQESDKVDRAVS 81
Query: 264 N 262
N
Sbjct: 82 N 82
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 555 SSIAFHDSSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHNGGTVLS--ARSDPM 388
++I+F S + LFL G PP G + AHA P N GG S A DP+
Sbjct: 65 NAISFAASLVVVSLLFLLLHKGRPPPAPGDQAAHAHPGAGLNPPGGFWRSTEAAGDPV 122
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 510 FLRRGHGATPPMR-GRRRAHAPPCPSRNHNGGTVLSARSDPMQELTKAIMPS 358
++R G G PP+ RRAH P CP +V AR P ++A+ P+
Sbjct: 30 WIRVGDGRPPPLPVAHRRAHTPWCPPL-----SVADARMPPRPPPSEAVQPA 76
>03_06_0777 +
36181095-36181311,36181444-36181530,36181785-36182725,
36182956-36183006,36183240-36183328,36184975-36185078,
36185179-36185278,36185396-36185471,36185556-36185670,
36185755-36186286,36187032-36187527
Length = 935
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 497 VTAPPLPCGADDERMLRRVQVATTMVALCYRLAPIRCKNSP 375
V++PPL C R+LR + + L RL P+R +SP
Sbjct: 7 VSSPPLACCLQLHRLLRPAALLPSPPRLRLRLRPLRADSSP 47
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = -3
Query: 567 HSQKSSIAFHDSSSPIHFLFLRRGHGATPPMR-------GRRRAHAPPCPSRNHNGGTVL 409
H + S + +P+H+ +GA PP R + +AH P P NG
Sbjct: 361 HGHEDSRHSAPAQAPVHYPVHEPRYGAPPPSRCPYGTDKPKNKAHVMPAPEPTANGHHFA 420
Query: 408 SARSDPMQELTKAIMPSEHLRRP 340
S + P L+ P+ H R P
Sbjct: 421 SPVALPPHSLSPR-NPNVHSRSP 442
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 441 PSRNHNGGTVLSARSDPMQELTKAIMPSEHLRRP 340
P H + ARS P +++ IM S+ LR P
Sbjct: 425 PESTHGANSTTKARSSPFKKILDPIMKSKSLRNP 458
>10_07_0130 + 13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 591 TASXCEMVHSQKSSIAFH-DSSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHNGGT 415
TA+ H+Q+S+ D P+ L RR H P GRRR C N GG
Sbjct: 784 TAAPAAAPHAQRSAAGRRRDRGVPL-LLLSRRRH-RVPTREGRRRRGGFSCGGANDGGGD 841
Query: 414 VLSARSDPMQELTKAIMPSE 355
V R+D +E + + E
Sbjct: 842 V---RADMRREGRRGLQHME 858
Score = 29.1 bits (62), Expect = 3.7
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +3
Query: 69 RGGGFRCVCSSCHR*GGACCRQNQEIGPRRGAQ*IRGNVVPQPP----DSAT*RCPYGVM 236
R GGF C ++ GG R + RRG Q + G VP+ P DSA R +G
Sbjct: 826 RRGGFSCGGAND---GGGDVRADMRREGRRGLQHMEGEGVPREPGGGADSAR-RRSWG-- 879
Query: 237 VQAAGRSFSWS*HRRGDSPGPCGLGKS*PSTP 332
+ G R+ G GL S PS+P
Sbjct: 880 AEGWGGGAGSGAQRKDGGDGGAGLAPSPPSSP 911
>02_05_0272 - 27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = -3
Query: 201 PGAVEPHCLGFTERHVEALSPDFADNMRHLSGGKTSRRSETPLPGPRSRTPLG 43
P A H F R + PD +D+ SG T R PLPG RS P G
Sbjct: 978 PPAYYAHLAAFRARFY--MEPDTSDSGSMASGAHT--RGGGPLPGARSTKPAG 1026
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 122 MLSAKSGDRASTWRSVNPRQCGSTAPG 202
++ A S DR WRSV P CGS PG
Sbjct: 36 VMEAVSSDRE--WRSVGPDPCGSPWPG 60
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 507 KIGNE*ATMSHGRQCSTFASAPSRXRRRWG 596
+IG+ A M G QC T P++ RRR G
Sbjct: 571 QIGSRGACMDGGAQCDTRRKCPAKKRRRLG 600
>05_03_0517 - 14936085-14936867
Length = 260
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 597 RPTASXCEMV--HSQKSSIAFHDSSSPIHFLFLRRGHGATPP 478
RPT+S H+ +SS SSS IH +L GHG T P
Sbjct: 28 RPTSSRMITAADHAARSSRRSSSSSSSIHHYYL-HGHGTTTP 68
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = -3
Query: 498 GHGATPPMR------GRRRAH--APPCPSRNHNGGTVLSARSDPM-QELTKAIMPSEHLR 346
G GA PP R G+RR APP + NGGT + S P+ Q T A +P R
Sbjct: 36 GLGAAPPQRLPQTSSGQRRVTPMAPPQQRQQVNGGTAVPMASLPVNQAPTGAPLPQ---R 92
Query: 345 RPESEAYSVTIYP 307
R S + T+ P
Sbjct: 93 RRTSHGGNNTVVP 105
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 396 RSEPIAQCHHCGCDLDTAEHALVVCP 473
R EP+A C CG + + HAL CP
Sbjct: 421 RLEPMAICSICGREEEDVAHALCRCP 446
>07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518
Length = 320
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 200 GQRHLTMPIWSHGPGGWPILQLVVAP 277
GQ L MPIW HG G L + V P
Sbjct: 258 GQAALAMPIWDHGKMGCGTLAVGVRP 283
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/75 (30%), Positives = 30/75 (40%)
Frame = -3
Query: 279 DGATTN*RIGQPPGP*LHMGIVRWRCPGAVEPHCLGFTERHVEALSPDFADNMRHLSGGK 100
+GAT +G PP P G+ WR GA H + R P A L+
Sbjct: 134 EGATAA-AVGPPPPPFPQSGLQIWRREGAPTIHAVAPPRRPPPPRLPSRAS---PLAPAG 189
Query: 99 TSRRSETPLPGPRSR 55
+ + PLPG R R
Sbjct: 190 SDGMAPPPLPGRRRR 204
>09_04_0296 + 16461482-16461544,16462087-16463097
Length = 357
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 490 RHPSHAGQTTSACSAVSKSQPQWWHCAIGSLRSDARTHQSNHAQ*AP 350
RH +A T S+ A S S + + + +++ TH+ H+Q P
Sbjct: 120 RHSGYASSTASSSDASSSSYSSFTCSSASTTDTESTTHRRRHSQPPP 166
>06_01_0198 + 1529190-1530371
Length = 393
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 212 LTMPIWSHGPGGWPILQLVVAPSRRFARSLWIG 310
L + S P + L P+ RFARS W+G
Sbjct: 180 LVATLLSSSPFAGALASLAALPATRFARSFWLG 212
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 118 AHVVGKIRR*GLDVALSKSEAMWFHSP 198
+ +V KI R G +V LS + WFH+P
Sbjct: 559 SRIVLKILRLGYNVLLSDVDVYWFHNP 585
>04_01_0442 +
5770019-5771626,5773500-5773571,5774508-5774603,
5774739-5774885,5775429-5775560
Length = 684
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 445 RRSMRSSSAPHGRGGAVTSSQK 510
RRS++++S P RG ++TS Q+
Sbjct: 452 RRSLQAASVPQSRGSSITSQQQ 473
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 463 TSACSAVSKSQPQWW 419
TSACSA SK WW
Sbjct: 310 TSACSATSKGSKSWW 324
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 716 PVPRPTCEGXPKQLEGGPGLGRDPPP 639
P P P CE P +++ PG PPP
Sbjct: 197 PPPPPPCEEEPVKMKISPGSSTFPPP 222
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.9 bits (59), Expect = 8.5
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +2
Query: 191 TAPGQRHLTMPIWSHGPG-GWPILQLVVAPSRRFARSLWIG*IVTEYASLSGLRRCSLGM 367
TAP L MP WS P + L+ V + R + V+ + S SG+ SL
Sbjct: 55 TAPSASLLLMPSWSAHPSLPYLALKAVTSFPANSPRLPSVHAAVSLFDSASGVPLASLDG 114
Query: 368 IAL-------VSSCIGSERADSTVPPLWLRLGHGGACA 460
AL VS+ S A T PP L L GA A
Sbjct: 115 SALTLLRTAAVSALAASLLASPTRPPSTLALAGAGALA 152
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 207 RCPGAVEPHCLGFTERHVEALS--PDFADNM 121
RCP + P+C G +E +S P+F D+M
Sbjct: 313 RCPRDISPYCEGILNLALEYISYDPNFTDSM 343
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 410 STVPPLWLRLGHGGA--CARRLPRMGGVAP*PL 502
S P WLR+G GG C+RR R P PL
Sbjct: 317 SPAHPPWLRMGRGGGARCSRRRGRSRRPPPLPL 349
>01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160
Length = 146
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 495 HGATPPMRGRRRAHAPPCPSRNHNGGTVLSARSDPMQELTKAIMPSEHLRR 343
HG TPPMR RR P N L+ + +T I+P H+ R
Sbjct: 86 HGLTPPMRDARRRRFRREPDLNVFNAFPLAPHGSTLSIIT-VIVPFTHVYR 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,261,812
Number of Sequences: 37544
Number of extensions: 623401
Number of successful extensions: 2484
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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