Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d17r
(716 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 34 0.17
AY069587-1|AAL39732.2| 639|Drosophila melanogaster LD33388p pro... 29 6.3
AY058785-1|AAL14014.1| 1068|Drosophila melanogaster SD08329p pro... 29 6.3
AE014296-109|AAN11444.1| 1340|Drosophila melanogaster CG17090-PB... 29 6.3
AE014296-108|AAF47392.2| 1340|Drosophila melanogaster CG17090-PA... 29 6.3
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 29 8.4
AY071745-1|AAL49367.1| 150|Drosophila melanogaster RH49748p pro... 29 8.4
AY070643-1|AAL48114.1| 150|Drosophila melanogaster RH02823p pro... 29 8.4
AE014134-472|AAN10414.1| 126|Drosophila melanogaster CG2862-PB,... 29 8.4
AE014134-471|AAF51208.2| 150|Drosophila melanogaster CG2862-PA,... 29 8.4
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 34.3 bits (75), Expect = 0.17
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 235 WSRRLADPSVGRSTVEAIRPVLVDWVNRDRVRLTFRPSQVLTGHDCFGEFLHR 393
W R + GR T + I P L +W + + + + +Q LT H CF +L R
Sbjct: 853 WQTRWQESQRGRWTYKLI-PQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCR 904
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 411 AQCHHCGCDLDTAEHALVVCPAWEGWRRDLFAKIGN 518
AQC +C ++TAEH L+ C + R L A G+
Sbjct: 911 AQCLYCTDAVETAEHILLHCSRFAEERAQLVALAGS 946
>AY069587-1|AAL39732.2| 639|Drosophila melanogaster LD33388p
protein.
Length = 639
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 130 RQHAPPQRWQDEQTQRNPPPRATIKNP 50
+Q APP + Q +Q Q PPP+ + P
Sbjct: 312 QQPAPPPQQQQQQYQPQPPPQQVLPQP 338
>AY058785-1|AAL14014.1| 1068|Drosophila melanogaster SD08329p
protein.
Length = 1068
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 130 RQHAPPQRWQDEQTQRNPPPRATIKNP 50
+Q APP + Q +Q Q PPP+ + P
Sbjct: 742 QQPAPPPQQQQQQYQPQPPPQQVLPQP 768
>AE014296-109|AAN11444.1| 1340|Drosophila melanogaster CG17090-PB,
isoform B protein.
Length = 1340
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 130 RQHAPPQRWQDEQTQRNPPPRATIKNP 50
+Q APP + Q +Q Q PPP+ + P
Sbjct: 1013 QQPAPPPQQQQQQYQPQPPPQQVLPQP 1039
>AE014296-108|AAF47392.2| 1340|Drosophila melanogaster CG17090-PA,
isoform A protein.
Length = 1340
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 130 RQHAPPQRWQDEQTQRNPPPRATIKNP 50
+Q APP + Q +Q Q PPP+ + P
Sbjct: 1013 QQPAPPPQQQQQQYQPQPPPQQVLPQP 1039
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 28.7 bits (61), Expect = 8.4
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 226 MESWSRRLADPSV-GRSTVEAIRPVLVDWVNRD-RVRLTFRPSQVLTGHDCFGEFLH 390
++SW R D S GR T I V + + RD + R S +LTGH F FLH
Sbjct: 891 IQSWQNRWDDDSEPGRVTHRFIPYVTLAY--RDPSFGFSMRTSFLLTGHGSFNAFLH 945
>AY071745-1|AAL49367.1| 150|Drosophila melanogaster RH49748p
protein.
Length = 150
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 579 CEMVHSQKSSIAFHD--SSSPIHFLFLRR 499
C+ +H +AFHD +P HFL + R
Sbjct: 53 CKFIHEDDKCVAFHDVAPQAPTHFLVIPR 81
>AY070643-1|AAL48114.1| 150|Drosophila melanogaster RH02823p
protein.
Length = 150
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 579 CEMVHSQKSSIAFHD--SSSPIHFLFLRR 499
C+ +H +AFHD +P HFL + R
Sbjct: 53 CKFIHEDDKCVAFHDVAPQAPTHFLVIPR 81
>AE014134-472|AAN10414.1| 126|Drosophila melanogaster CG2862-PB,
isoform B protein.
Length = 126
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 579 CEMVHSQKSSIAFHD--SSSPIHFLFLRR 499
C+ +H +AFHD +P HFL + R
Sbjct: 29 CKFIHEDDKCVAFHDVAPQAPTHFLVIPR 57
>AE014134-471|AAF51208.2| 150|Drosophila melanogaster CG2862-PA,
isoform A protein.
Length = 150
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 579 CEMVHSQKSSIAFHD--SSSPIHFLFLRR 499
C+ +H +AFHD +P HFL + R
Sbjct: 53 CKFIHEDDKCVAFHDVAPQAPTHFLVIPR 81
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,033,290
Number of Sequences: 53049
Number of extensions: 933428
Number of successful extensions: 3157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3155
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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