Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17r
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    29   2.5  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha ...    28   7.7  
AL132904-4|CAC35836.2|  582|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 600 TRPTASXCE-MVHSQKSSIAFHDSSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHN 424
           T P  S CE +  S+KS  +   SSSPI    L      TP  +        PC S+  +
Sbjct: 728 TSPVVSLCEDLKASKKSKKSRSISSSPIPPNSLHEEETQTPLRQNMVHMATDPCTSQLVH 787

Query: 423 GGTVLS--ARSDPMQELTKAIM 364
             TV S   R D   E+ + +M
Sbjct: 788 RSTVTSPVGREDAETEMPQKMM 809


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 600 TRPTASXCE-MVHSQKSSIAFHDSSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHN 424
           T P  S CE +  S+KS  +   SSSPI    L      TP  +        PC S+  +
Sbjct: 728 TSPVVSLCEDLKASKKSKKSRSISSSPIPPNSLHEEETQTPLRQNMVHMATDPCTSQLVH 787

Query: 423 GGTVLS--ARSDPMQELTKAIM 364
             TV S   R D   E+ + +M
Sbjct: 788 RSTVTSPVGREDAETEMPQKMM 809


>Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical
           protein F07A5.2 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 489 ATPPMRGRRRAHAPPCPSRNHNGGTVLSARSDPMQELTKAIMPSEHLR 346
           A P +RGR +   PP P + H  G + S R  P++  + + + S+ +R
Sbjct: 209 AHPDLRGRFKPVPPPTPMKKHTPG-INSPRKRPLRRESISSVNSKSVR 255


>U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha
           protein 9 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 214 NDAHMESWSRRLADPSVGRSTVEAIRPVLVDWVNRDRVRLTFRPSQVLTGHD 369
           +D+    +S  +A   V R+ +  + P  +D +     +  F P Q+LTG +
Sbjct: 51  DDSFNTFFSETMAGKHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKE 102


>AL132904-4|CAC35836.2|  582|Caenorhabditis elegans Hypothetical
           protein Y111B2A.8 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 138 DFADNMRHLSGGKTSRRSETPLPGP 64
           D AD MR   GG   + SE P+P P
Sbjct: 126 DLADEMRLRGGGPPKQGSEPPIPKP 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,981
Number of Sequences: 27780
Number of extensions: 418601
Number of successful extensions: 1279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)