Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17r
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   3.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 600 TRPTASXCEMVHSQKSSIAFHDSSSPIH 517
           T  T S CEM+H+ + +     ++ P+H
Sbjct: 566 TAATLSFCEMIHNAQVNKRSIHNNYPVH 593


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 532 IVAYSFPIFAKRSRRHPSHAGQTTSACSAVSKS 434
           I   +F + A+ +R + +H G+    C   SKS
Sbjct: 96  ICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKS 128


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 624 VERGPGRRISP 656
           V+RGPG R+SP
Sbjct: 109 VQRGPGGRLSP 119


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 155 TWRSVNPRQCGSTAPGQRHL 214
           T RSVNPR  GS     R L
Sbjct: 385 TGRSVNPRYYGSLQAAARKL 404


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 472  GQTTSACSAVSKSQPQWWHCAIGSLRSDA 386
            G  T AC+AV     +W+      +R+D+
Sbjct: 1329 GSATLACNAVGDPTREWYKGQGEQIRTDS 1357


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 472  GQTTSACSAVSKSQPQWWHCAIGSLRSDA 386
            G  T AC+AV     +W+      +R+D+
Sbjct: 1325 GSATLACNAVGDPTREWYKGQGEQIRTDS 1353


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 549 IAFHDSSSPIHFLFL 505
           + FH+ S P H+L+L
Sbjct: 100 VTFHEMSIPNHYLWL 114


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 228 HMGIVRWRCPGAVEPHC 178
           H G+V W+ P   +  C
Sbjct: 137 HQGLVEWKPPAIYKSSC 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,496
Number of Sequences: 438
Number of extensions: 4997
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)