Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d17r
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62400.1 68414.m07040 protein kinase, putative similar to pro... 33 0.25
At1g59453.1 68414.m06679 transcription factor-related weak simil... 31 0.76
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill... 29 2.3
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 2.3
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 2.3
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 29 2.3
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 3.1
At1g30710.1 68414.m03754 FAD-binding domain-containing protein s... 29 3.1
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 28 5.4
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote... 28 5.4
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 28 5.4
At1g27030.1 68414.m03295 expressed protein 28 5.4
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 28 7.1
At5g42370.1 68418.m05159 expressed protein 27 9.4
At5g36740.1 68418.m04402 PHD finger family protein 27 9.4
At5g36670.1 68418.m04388 PHD finger family protein 27 9.4
At4g26330.1 68417.m03786 subtilase family protein contains simil... 27 9.4
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 9.4
>At1g62400.1 68414.m07040 protein kinase, putative similar to
protein kinase gi|170047|gb|AAA34002; contains protein
kinase domain, Pfam:PF00069
Length = 345
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +2
Query: 161 RSVNPRQCGSTAPGQRHLTMPIWSHGPGGWPILQLVVAPSRRFARSLWIG*IVTEYASLS 340
++ P S P HL WS P P +VA ++ + G +T +ASL+
Sbjct: 256 KNERPPLPASCQPALAHLIKRCWSENPSKRPDFSNIVAVLEKYDECVKEGLPLTSHASLT 315
Query: 341 GLRRCSLGMIALVSSCIGSERADSTVP 421
++ L + + I S + S+VP
Sbjct: 316 KTKKAILDHLKGCVTSISSPFSSSSVP 342
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 503 EEVTAPPLPCGADDERMLRRVQVATTMVALCYRLAPIRCKNSPKQS 366
+E+ APPLPC + M+R +V ++ LC L+ K+ +S
Sbjct: 1049 QELPAPPLPCKRRIQTMMRNDKVRKAVMRLCNLLSERYAKHLKTES 1094
>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
[Zebrafish, Danio rerio] SWISS-PROT:P79741
Length = 590
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 186 PHCLGFTERHVEALSPDFADNMRHLSGGKTSRRSETPLPG 67
PH F + E PD+A+ ++ L +R PLPG
Sbjct: 428 PHLSPFVDNEAEGYVPDYAETIKRLQA--AARNEVLPLPG 465
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 481 SHAGQTTSACSAVSKSQPQWWHCAIGSLRSDARTHQS 371
SH G+ T AC+ V ++Q QWW+ G L + + QS
Sbjct: 662 SH-GRNTPACAVVPETQ-QWWYRPCGPLIASTGSFQS 696
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 481 SHAGQTTSACSAVSKSQPQWWHCAIGSLRSDARTHQS 371
SH G+ T AC+ V ++Q QWW+ G L + + QS
Sbjct: 635 SH-GRNTPACAVVPETQ-QWWYRPCGPLIASTGSFQS 669
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 132 ADNMRHLSGGKTSRRSETPLPGPRSRTPL 46
ADNM+ + G +S R +P G RS TP+
Sbjct: 160 ADNMQQIRGRPSSARHPSPASGRRSGTPV 188
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 534 SSSPIHFLFLRRGHGATPPMRGRRRAHAPPCPSRNHNGGTVLSARSDPMQELTKAIMPSE 355
S SPI L R + P+RGRRR P P+R + S D + L+++ P+
Sbjct: 620 SRSPIR---LSRRSISRSPVRGRRRISRSPVPARRRS-VRPRSPPPDRRRSLSRSASPNG 675
Query: 354 HLRR 343
+RR
Sbjct: 676 RIRR 679
>At1g30710.1 68414.m03754 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 531
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 210 WRCPG-AVEPHCLGFTERHVEALSPDFADNMR 118
W PG AV CL TER EA+SP + N R
Sbjct: 438 WFVPGEAVAKDCLSQTERLFEAMSPYVSKNPR 469
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 390 MQELTKAIMPSEHLRRPESEAYSVTIYPIHKDRANRLDGATTN*RIGQP 244
+++L ++PSE ++ SE V+ +P+H++ +L T N IG P
Sbjct: 229 LEKLFPRLLPSEKVKAAVSEDVQVSTHPLHEE--VKLTTETDNMSIGFP 275
>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase 5,
Arabidopsis thaliana, PIR1:S27756
Length = 1013
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 295 VLVDWVNRDRVRLTFRPSQVLTGHDCFGEFLHR 393
+LVDWV+R + L HDC +HR
Sbjct: 798 LLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHR 830
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 413 TVPPLWLRLGHGGACARRLP 472
T P L L LG GGAC R++P
Sbjct: 111 TPPHLELSLGGGGACRRKIP 130
>At1g27030.1 68414.m03295 expressed protein
Length = 310
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 148 GLDVALSKSEAMWFHSPRTAPPNDAH 225
GLD K +WF P PND H
Sbjct: 87 GLDFPKKKLRVLWFSPPDVHVPNDGH 112
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 316 DLPNPQGPGESPRRCYDQLKDRPAAWTMTPYGHR*VALSGGCG 188
D+ +P+ G RRC D+ W P G + L CG
Sbjct: 207 DVSSPESGGAEERRCLHCATDKTPQWRTGPMGPK--TLCNACG 247
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 121 HVVGKIRR*GLDVALSKSEAMWFHSPRTAPPNDAHME-SWSRRLADPSVGRSTVEAIRPV 297
++ G IRR + ++ W +SPR P ++ M+ +++ A+P G S ++ V
Sbjct: 59 NIYGDIRRPLTVIGKERTFGPWRNSPRFVPSSEEEMKLRYAKAKANP--GYSRIQRKAKV 116
Query: 298 LVDWVNRD 321
+ W + D
Sbjct: 117 IGTWDDHD 124
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 461 RRLPRMGGVAP*PLRKNRK*IGDDESWKA--MLDFCECTISXK 583
RR+ R G P P +K + + D+ WKA L CE + +
Sbjct: 316 RRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESR 358
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 461 RRLPRMGGVAP*PLRKNRK*IGDDESWKA--MLDFCECTISXK 583
RR+ R G P P +K + + D+ WKA L CE + +
Sbjct: 316 RRMVRKRGRPPTPQKKRKSGMTDESDWKAKKRLKLCESPLESR 358
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 331 LTFRPSQVLTGHDCFGEFLHRIGASR*HSATIV 429
+TF+P+++ +G FGE + G R S +V
Sbjct: 703 VTFKPTEIFSGRYVFGEIMWTNGLHRVRSPVVV 735
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 193 CGTTLPRIY*APRRGPIS*FCRQHAPPQRWQDEQTQRNPPPRATIKNPL 47
CG +P+ + P GP PPQ + Q PPP I PL
Sbjct: 243 CGRRIPQGFSCP--GPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPL 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,555
Number of Sequences: 28952
Number of extensions: 406462
Number of successful extensions: 1192
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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