Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0779 + 7129879-7130398,7130585-7130664                           33   0.17 
04_03_0689 + 18746735-18748296,18748401-18748485                       30   1.6  
11_01_0089 + 670597-672210                                             28   6.5  
10_08_0358 - 17162348-17162368,17162532-17163077                       28   6.5  
11_04_0397 - 17230152-17231453                                         27   8.6  
01_06_1638 + 38812226-38812660,38812989-38813063,38813180-388132...    27   8.6  

>12_01_0779 + 7129879-7130398,7130585-7130664
          Length = 199

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 471 IQRGIQWDN--PFKRAPSRQASDS*PRGLVVVAPTTAGPASRGGG 343
           + RG QW+   P +  P   A D  P G V+V   TAG    GGG
Sbjct: 48  VWRGAQWEAAWPRRTKPVVVAEDEPPSGGVIVGACTAGGGEEGGG 92


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 344 PPPRDAGPAVVGATTTSPLGQLSEACLDGARLNGLSH*IPR 466
           P PR   P   G +  +PLG L    L G+   GL H  P+
Sbjct: 15  PQPRPPQPQQQGGSPATPLGHLRPPSLAGSPFQGLFHTPPQ 55


>11_01_0089 + 670597-672210
          Length = 537

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 582 LGTGERSLRRRYASCSSRVLGRSIRVMEGRFGPTLVLIQRGIQWDNPFKRAPSRQASDS* 403
           LG G ++ R+R   C    L   ++     F P  +   RG+      K  P+R+A    
Sbjct: 19  LGGGRKTKRKRRRRC----LCLRLQATVSSFPPATIRWPRGLFLSPLTKPRPTRRAHQCV 74

Query: 402 PRGLVVVAPTTAGPASRG 349
           P     + PTTA  A+ G
Sbjct: 75  PHPRPRLPPTTASCAAGG 92


>10_08_0358 - 17162348-17162368,17162532-17163077
          Length = 188

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 355 GRWTGGRRRHDHQPPRSAIRSLPRWRPFEWVIPL 456
           G W    RR    PP     +L RW    W+ PL
Sbjct: 131 GGWLPSVRRFADLPPERREAALRRWSSARWLFPL 164


>11_04_0397 - 17230152-17231453
          Length = 433

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 HLSHRPPPRDAGPAVVGAT 385
           H +HRP PR  G A  GAT
Sbjct: 54  HWAHRPLPRGVGTAAFGAT 72


>01_06_1638 +
           38812226-38812660,38812989-38813063,38813180-38813284,
           38813387-38813472,38813554-38813674,38813761-38813840,
           38814005-38814067,38814205-38814326,38814429-38814514,
           38814626-38814750,38814883-38814911,38815188-38815333,
           38815643-38815822,38816445-38816585
          Length = 597

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 444 GYPTEYPAGLEPAWVQTGLPSPGCSCLKRVKSSLH 548
           GYP ++ A +E  W   G  + G SC+     + H
Sbjct: 426 GYPPDFKALIEECWDTQGNDTCGLSCMNAFLCTYH 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,687
Number of Sequences: 37544
Number of extensions: 423316
Number of successful extensions: 1530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)