Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d17f
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07) 30 1.2
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_36718| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 28 5.0
SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06) 28 6.6
SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10) 28 6.6
SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15) 28 6.6
SB_24245| Best HMM Match : MR_MLE (HMM E-Value=7.3) 27 8.7
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40) 27 8.7
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
Length = 508
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 298 LYLFMSSVSCEV*MWIVERQKVFSRFDSDLARPPSPVECGSPAISFLPK 152
L+L SSV C +W ++ ++ + PSP E G P S LPK
Sbjct: 149 LFLVSSSVDCTARLWTLD-----GKYVGMFGQSPSPNEEGEPRESLLPK 192
>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 371 PPVQRPEGEGDGRDELRTRHLNFPPLPFHE 282
PP E D DELR+ + PP P H+
Sbjct: 247 PPTSDSENSDDENDELRSLIIQLPPSPTHD 276
>SB_49234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 586 RSRDRREESKKTICKLLFTRFRQEHPGD 503
+SR +R + KKT F++ R +HPG+
Sbjct: 114 KSRSKRGDLKKTSMSRFFSKSRDQHPGN 141
>SB_36718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 329 HLSHRPPPRDAGPAVVGATTTSPLGQLSEACLDGARLNGL 448
HL RPPP A P + A +T+ ++++ D A + GL
Sbjct: 47 HLDTRPPPISARPCI--AMSTTQQSKITKTITDAAVITGL 84
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 521 AGASG*WKAGLDPRWF*SSGVFSGITHSNGRHLGRLRIA 405
+G+SG AG+ SS V SG TH N G+ RIA
Sbjct: 3383 SGSSGVGNAGVAAASADSSAVASGNTHQNMNSFGQSRIA 3421
>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1489
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 72 PQPSEKASARRLRNAVATQSVPRT 143
P P E A+A L NAVATQ + R+
Sbjct: 1252 PTPKESAAADALYNAVATQLIKRS 1275
>SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)
Length = 380
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 270 ARFRCGLLSDRRFLAG--STPTWPARHPQWSVEVRRFHSYQKKGWFLARTAWLLRSL 106
A + GL +L+ S P WP+ HP+ VE R + QK L + +W+ + +
Sbjct: 169 ATYTAGLSGSAWYLSCLYSHPEWPSIHPRQIVEELRGNVGQKWTRRLVQPSWMYKHM 225
>SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)
Length = 1347
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 329 HLSHRPPPRDAGPAVVGATTTSPLGQLSEACLDGARLNGLSH*IPRWIRTSV----GPNR 496
H + R PP AGP + A +T+ ++++ D A + GL I W+ V
Sbjct: 849 HFNTRAPPISAGPCI--AMSTTQQSKITKTITDAAVITGLVAGI-GWVGRKVLREDFTKD 905
Query: 497 PSITRMLLPKTRE 535
P+ T PKT+E
Sbjct: 906 PTKTTPPSPKTKE 918
>SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15)
Length = 630
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 270 ARFRCGLLSDRRFLAG--STPTWPARHPQWSVEVRRFHSYQKKGWFLARTAWLLRSL 106
A + GL +L+ S P WP+ HP+ VE R + QK L + +W+ + +
Sbjct: 529 ATYTAGLSGSAWYLSCLYSHPEWPSIHPRQIVEELRGNVGQKWTRRLVQPSWMYKHM 585
>SB_24245| Best HMM Match : MR_MLE (HMM E-Value=7.3)
Length = 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 329 HLSHRPPPRDAGPAVVGATTTSPLGQLSEACLDGARLNGL 448
HL+ R PP A P + A +T ++++ DGA + GL
Sbjct: 172 HLNTRAPPISARPCI--AMSTKQESKMTKTITDGAVITGL 209
>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
Length = 644
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 444 GYPTEYPAGLEPAW 485
GYP +YPAGL+ W
Sbjct: 563 GYPNKYPAGLDCQW 576
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 279 QFHARFRCGLLSDRRFLAGSTPTWPARHPQWSVEVRRFHSYQKKG 145
Q H F C +L RR LA W +RH S QK G
Sbjct: 466 QNHNHFCCHVLKVRRALARMREVWFSRHGNLLASTSSTPSRQKSG 510
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,509,832
Number of Sequences: 59808
Number of extensions: 409950
Number of successful extensions: 1070
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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