Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17f
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF292049-1|AAG41145.1|  172|Caenorhabditis elegans 5C820 protein.      29   3.3  
AF039045-3|AAV58877.1|  172|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    28   4.4  

>AF292049-1|AAG41145.1|  172|Caenorhabditis elegans 5C820 protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 153 FGKNEIAGLPHSTGDGGRAKSESNRLK 233
           FGK  + GLP+STG G  AK + + L+
Sbjct: 99  FGKFFVDGLPYSTGHGAFAKWKKHTLR 125


>AF039045-3|AAV58877.1|  172|Caenorhabditis elegans Hypothetical
           protein F15E11.15b protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 153 FGKNEIAGLPHSTGDGGRAKSESNRLK 233
           FGK  + GLP+STG G  AK + + L+
Sbjct: 99  FGKFFVDGLPYSTGHGAFAKWKKHTLR 125


>AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical
           protein F15E11.15a protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 153 FGKNEIAGLPHSTGDGGRAKSESNRLK 233
           FGK  + GLP+STG G  AK + + L+
Sbjct: 144 FGKFFVDGLPYSTGHGAFAKWKKHTLR 170


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 126 AWLLRSLTS*LMLFLRAAGLPLRSSLDKRADCWAI-VLVAV 7
           +W+   +TS L+ F+R   +  +S L K  D W I VL+A+
Sbjct: 132 SWMGCCITSILLAFIRVCDVDSQSKLKKMFDGWRIYVLLAI 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,193
Number of Sequences: 27780
Number of extensions: 295273
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)