Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d17f
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17740.2 68417.m02649 C-terminal processing protease, putativ...    30   1.0  
At4g17740.1 68417.m02648 C-terminal processing protease, putativ...    30   1.0  
At3g16250.1 68416.m02050 ferredoxin-related contains Pfam profil...    30   1.3  
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At3g20260.1 68416.m02566 expressed protein                             28   4.1  
At3g52115.1 68416.m05720 hypothetical protein                          24   6.1  
At1g79870.1 68414.m09330 oxidoreductase family protein contains ...    27   9.5  

>At4g17740.2 68417.m02649 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 505

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 417 ASDS*PRGLVVVAPTTAGPASRGG 346
           ASD  P GLVV++    GPA+R G
Sbjct: 211 ASDGPPAGLVVISAAPGGPANRAG 234


>At4g17740.1 68417.m02648 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 417 ASDS*PRGLVVVAPTTAGPASRGG 346
           ASD  P GLVV++    GPA+R G
Sbjct: 221 ASDGPPAGLVVISAAPGGPANRAG 244


>At3g16250.1 68416.m02050 ferredoxin-related contains Pfam profile:
           PF00111 2Fe-2S iron-sulfur cluster binding domains
          Length = 204

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 409 IRSLPRWRPFEWVIPLNTPLD 471
           I+ LP W+  EW IP N P D
Sbjct: 177 IQQLPEWKAHEWNIPKNIPND 197


>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1008

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -3

Query: 319 LDTSISLLYLFMSSVSCEV*MWIVERQKVFSRFDSDLARPPSPVECGSPAISFLPKKRVV 140
           + ++IS LYL  +++  EV  WI   QK FSR      R    ++C SP IS L    ++
Sbjct: 723 ISSNISELYLNRTAIE-EVPWWI---QK-FSRLKRLRMRECKKLKCISPNISKLKHLEML 777

Query: 139 LGTDCVAT 116
             ++C+AT
Sbjct: 778 DFSNCIAT 785


>At3g20260.1 68416.m02566 expressed protein
          Length = 437

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 325 SGLDTSISLLYLFMSSVSCEV*MWIVERQKVFSRFDSDLARPPSPV 188
           + +D  ++   L MS +S E  +W  E+ K  +     L R PSP+
Sbjct: 388 AAIDIKLATRVLRMSKISKEQLLWCEEKMKKLNFSAGKLQRHPSPI 433


>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 251 C*ATEGF*PVRLRLGPPAIPSGVWKSG 171
           C   EG    R R  PP  P G W  G
Sbjct: 557 CEHHEGVSRHRYRYAPPMTPEGFWNIG 583



 Score = 22.2 bits (45), Expect(2) = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 356 PEGEGDGRDELRTRH 312
           PE EG+G   LR  H
Sbjct: 545 PENEGNGNKSLRCEH 559


>At1g79870.1 68414.m09330 oxidoreductase family protein contains
           Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain; similar to glyoxylate
           reductase from Thermococcus litoralis [gi:13515409]
          Length = 313

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 197 IPSGVWKSGDFILTKKKGGSWHGLRG 120
           + SG WK G+F LT K  G   G+ G
Sbjct: 126 VRSGKWKQGEFQLTTKFSGKSVGIIG 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,961
Number of Sequences: 28952
Number of extensions: 290942
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)