Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d16r
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36348| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)           31   1.0  
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             31   1.0  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 28   7.3  
SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)                  28   7.3  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)                   27   9.7  
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_36348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 29/74 (39%), Positives = 35/74 (47%)
 Frame = -1

Query: 430 TIGRMGYIVGPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAV 251
           ++G  G IVG   G A  F  TT     IRGK+D  N+  GGA SG +     K   +  
Sbjct: 23  SLGVKGAIVG---GAASLFAGTTCAMAAIRGKDDYKNWAAGGAASGALIGISRKSWALGS 79

Query: 250 PAAVVLGAIAVVKK 209
            AAV L A A   K
Sbjct: 80  GAAVALAAAAAAAK 93


>SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)
          Length = 446

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
 Frame = -1

Query: 544 GQDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFT 365
           G  + +  F+ +  A ++GL  A F   +      +V T   +G ++  +VG  +   + 
Sbjct: 61  GPAVVISFFIAAVAALLSGLCYAEFGSRIPKAGSAYVYTYVTLGELLAFIVGWNMILEYL 120

Query: 364 TNVAQNIRGKNDKLNYFLGGATSGFVFS---AWMKKGIIAVPAAVVLGAIAVV 215
              A   R  ++ +N   GGA   F  S    W  K +   P  + L AIA +
Sbjct: 121 IASATLARSCSEYINAISGGAIYKFFMSDIATWHVKALGPFPDFLAL-AIATI 172


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
 Frame = -1

Query: 544 GQDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFT 365
           G  + +  F+ +  A ++GL  A F   +      +V T   +G ++  +VG  +   + 
Sbjct: 343 GPAVVISFFIAAVAALLSGLCYAEFGSRIPKAGSAYVYTYVTLGELLAFIVGWNMILEYL 402

Query: 364 TNVAQNIRGKNDKLNYFLGGATSGFVFS---AWMKKGIIAVPAAVVLGAIAVV 215
              A   R  ++ +N   GGA   F  S    W  K +   P  + L AIA +
Sbjct: 403 IASATLARSCSEYINAISGGAIYKFFMSDIATWHVKALGPFPDFLAL-AIATI 454


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 48  IYIFYMIFYCLEPSVHPFNSSISLRRVQSCLTDLIVL 158
           IY+  +I+ C +P   P NS   +  +  CL  L VL
Sbjct: 584 IYLISLIYICWQPKSVPVNSGAQMLMIFRCLRPLRVL 620


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 48   IYIFYMIFYCLEPSVHPFNSSISLRRVQSCLTDLIVL 158
            IY+  +I+ C +P   P NS   +  +  CL  L VL
Sbjct: 898  IYLISLIYICWQPKSVPVNSGAQMLMIFRCLRPLRVL 934


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 204 PVFFTTAIAPSTTAAGTAIIPFFIQALNTKPDVAPPK 314
           P   TT     TTA  T   P   +A  T+P   PP+
Sbjct: 2   PTEVTTGSLVETTAGATTAPPVLTEAATTQPPAPPPE 38


>SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 359 VGSECEGNCHTH*RAYNIAHSTDCIDKTFWMREHKHIKRSTSKTGYCSIFTGYKC 523
           VG + EG   TH   Y  A S    D T+       +K  T+++ YC  F  Y+C
Sbjct: 104 VGHDSEGR--THVNGYKGAGSYSR-DITYDFTSVTQLKELTTRSSYCGQFIKYEC 155


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 470 KRSTSKTGYCSIFTGYKCL 526
           KRS  + G C ++TGY+C+
Sbjct: 17  KRSVLEDGICLVYTGYQCV 35


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 281 CLDEKGDYRGACRGGTRRNSCGKEDRH 201
           C+DE G +R  C  G +   C K+ +H
Sbjct: 667 CMDEGGKFRCVCADGYKGELCEKKAQH 693


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = +2

Query: 254 RDNPLFHPSTKHKARCGTTQEVIEFIVFPTNILGNVGSECE------GNCHTH*RAYNIA 415
           +DN +F  + KH    G  Q  ++F  F  N+L +  S+ E       +   H      +
Sbjct: 111 KDNLIFAQTNKHS---GAVQ-ALDFNPFQPNLLASGASDSEIFIWDMNSPGEHFTPGAKS 166

Query: 416 HSTDCIDKTFWMREHKHIKRSTSKTGYCSIF 508
              D I    W R+ +HI  STS  G C ++
Sbjct: 167 IPPDNISCLAWNRQVQHILASTSPCGRCVVW 197


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 54  IFYMIFYCLEPSVHPFNSSISLRRVQSCLTDLIVLVDCAASGKKIQ 191
           IF ++F+ L  ++H  + ++S+R +        V V+C  + ++ Q
Sbjct: 7   IFVLVFF-LSTAIHRLDGAVSVREIDITTKGKTVRVECTVTDERYQ 51


>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 359 VGSECEGNCHTH*RAYNIAHSTDCIDKTFWMREHKHIKRSTSKTGYCSIFTGYKC 523
           VG + EG  H    A    +S D    T+       +K  T+++ YC  F  YKC
Sbjct: 128 VGHDSEGRLHVDNYADCGTYSRDI---TYNNTSVAQLKEVTARSSYCEQFIKYKC 179


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 281 CLDEKGDYRGACRGGTRRNSCGKEDRHR*RLDLFPR 174
           C +E G Y  AC+ G    +C +E R   +LD   R
Sbjct: 514 CKNEHGGYSCACKAGFTGKNCEQECRSYKKLDTADR 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,647
Number of Sequences: 59808
Number of extensions: 404187
Number of successful extensions: 1183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)