Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d16r
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 111 ISLRRVQSCLTDLIVLVDCAASGKKIQ 191
           IS+R   + +TD++VLV  A  G K Q
Sbjct: 207 ISMRHRGAHITDIVVLVVAADDGVKEQ 233


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 443 FWMREHKHIKRSTSKTG 493
           +W+  HKHI R  +  G
Sbjct: 105 YWVERHKHIVRLVTAIG 121


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 466 HQKKHQQDRLLQHIYWLQ 519
           H   H Q + LQH+++ Q
Sbjct: 351 HHHHHHQTQSLQHLHYRQ 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,928
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)