Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d16r
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62880.1 68416.m07064 mitochondrial import inner membrane tra... 38 0.007
At2g28900.1 68415.m03512 mitochondrial import inner membrane tra... 31 0.48
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 29 2.6
At1g16010.1 68414.m01920 magnesium transporter CorA-like family ... 29 3.4
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 28 4.5
At5g24970.1 68418.m02957 ABC1 family protein contains Pfam domai... 28 6.0
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 28 6.0
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 28 6.0
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 28 6.0
At1g80900.1 68414.m09492 magnesium transporter CorA-like family ... 28 6.0
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 28 6.0
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem... 27 7.9
At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,... 27 7.9
At2g14835.2 68415.m01682 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At2g14835.1 68415.m01681 zinc finger (C3HC4-type RING finger) fa... 27 7.9
>At3g62880.1 68416.m07064 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains PFam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 136
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = -1
Query: 430 TIGRMGYIVGPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAV 251
+IGR G+ G + G+ FT T Q RGKND +N +GGA +G + + V
Sbjct: 55 SIGRFGFQCGLVSGV---FTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVV 111
Query: 250 PAAVVLGAIAVV 215
A ++ A +V+
Sbjct: 112 GMAGLVSAFSVL 123
>At2g28900.1 68415.m03512 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 148
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 352 QNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLG 230
+ IRG D N L GA +G V SA KKG + +LG
Sbjct: 92 ERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAILG 132
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 126 VQSCLTD---LIVLVDCAASGKKIQPSSMPVFFTTAI 227
VQ C+ D L L D A+ KK QPS V F+TA+
Sbjct: 180 VQQCIRDKQVLEALCDYASRTKKYQPSKPVVSFSTAV 216
>At1g16010.1 68414.m01920 magnesium transporter CorA-like family
protein (MRS2-1) low similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 442
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 523 TFVTSKYAAVAGLAGASFDVLMFSHPKGF 437
TFV + + VAG+ G +F++ F+ P F
Sbjct: 384 TFVVAIFGVVAGIFGMNFEIDFFNQPGAF 412
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 475 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 356
+F + FSH + V+T+GRM ++ V + + ++T ++
Sbjct: 661 TFSTMFFSHRETTVSTLGRMVLLIWLFVVLIITSSYTASL 700
>At5g24970.1 68418.m02957 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 719
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 264 PFFIQALNTKPDVAP 308
PF+I+AL+T+PD+ P
Sbjct: 149 PFYIKALSTRPDILP 163
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 475 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 356
SF + FSH + V+T+GR ++ V + + ++T ++
Sbjct: 631 SFSTMFFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASL 670
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 475 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 356
SF + FSH + V+T+GR ++ V + + ++T ++
Sbjct: 631 SFSTMFFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASL 670
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 475 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 356
SF + FSH + V+T+GR +V V + + ++T ++
Sbjct: 592 SFSTMFFSHRENTVSTLGRFVLLVWLFVVLIINSSYTASL 631
>At1g80900.1 68414.m09492 magnesium transporter CorA-like family
protein (MGT1) (MRS2) low similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 443
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 523 TFVTSKYAAVAGLAGASFDVLMFSHPKGF 437
TFV + + VAG+ G +F++ F P F
Sbjct: 385 TFVVAIFGVVAGIFGMNFEIDFFEKPGAF 413
>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
plant glutamate receptor family, PMID:11379626
Length = 933
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 475 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 356
SF + F+H + V+T+GR+ I+ V + + ++T ++
Sbjct: 630 SFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASL 669
>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA9)
identical to SP|Q9LU41 Potential calcium-transporting
ATPase 9, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
Length = 1086
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 292 FVFSAWMKKGIIAVPAAVVLGAIAVVKKTGIDEGWI 185
F++ AW +I + A V +K G+ EGW+
Sbjct: 198 FLWEAWQDLTLIILIIAAVTSLALGIKTEGLKEGWL 233
>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 847
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 260 NPLFHPSTKHKARCGTTQEV--IEFIVFPTNILGNVGSECEGNCHTH 394
N HP K +CG Q++ ++F F T G GS +G+CH H
Sbjct: 760 NKPLHP--KAHLQCGPGQKITTVKFASFGTPE-GTCGSYRQGSCHAH 803
>At2g14835.2 68415.m01682 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 255 AIIPFFIQALNTKPDVAPPKK 317
A++PF+ AL T P APP+K
Sbjct: 262 ALLPFWSSALPTLPVTAPPRK 282
>At2g14835.1 68415.m01681 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 255 AIIPFFIQALNTKPDVAPPKK 317
A++PF+ AL T P APP+K
Sbjct: 262 ALLPFWSSALPTLPVTAPPRK 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,783
Number of Sequences: 28952
Number of extensions: 286060
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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