Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d16f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.65 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    28   1.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   2.0  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   3.5  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   3.5  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   6.1  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   8.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.1  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 244 VGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 414
           +GMAVA    +  AQ+  G    +N F G     F++S  ++KG   +    V+G+I
Sbjct: 455 IGMAVA----SISAQSSMGMGAFINAFFGSVIEVFLYSVALRKGNAGLVEGSVIGSI 507


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 494 DLIVLVDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTKPD 339
           DL+  ++C     KI P S P +FT   A        A +  F + L+  P+
Sbjct: 536 DLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 109 MKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTF 270
           M  F+     + + + G   DV + S+    +NT+  +GYIVG   G  +  TF
Sbjct: 111 MMLFIGKATLSYSTILGLFDDVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTF 164


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -2

Query: 282 NVGSECEGNCHTH*RAY----NIAHSTDCIDKTFWMRE-HKHIKRSTSKTGYCSIFT 127
           N+ S+CE    +  ++Y    N+++    I KT  +RE  KH+K ST K   CS+ T
Sbjct: 71  NLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLKHST-KAPKCSLPT 126


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 280 VAQNIR--GKNDKLNYFLGGATSG 345
           VA NI   G N K  +FLGGA++G
Sbjct: 151 VASNIEKLGANPKRGFFLGGASAG 174


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 466 AAQSTKTIKSVKHDWTLLKDIEELKGWTDGSKQ 564
           AA    T+K    +W  L    ELK ++DG+++
Sbjct: 8   AALLVGTLKHAHKEWEALGKYAELKTYSDGTRE 40


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 234 YNIAHSTDCIDKTFWMREHKHI 169
           ++I + TD +D  FW++EH H+
Sbjct: 14  HDIGNRTDELD--FWLKEHLHV 33


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 431  VFFTTAIAPSTTAAGTAIIPFFIQALNTKP 342
            VFF+  + P+  AAG  I  FFI +    P
Sbjct: 1622 VFFSDVLIPALLAAGAIIPYFFINSQPGNP 1651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,705
Number of Sequences: 5004
Number of extensions: 50548
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)