Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d16f
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 31 0.89
06_03_0565 - 22308074-22309510,22309670-22309723 29 2.0
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 2.7
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094... 29 2.7
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 29 3.6
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 6.2
05_01_0086 + 569137-569190,569285-569336,570026-570057,570510-57... 28 6.2
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889... 28 6.2
03_03_0035 + 13977150-13979228,13979351-13979824 28 6.2
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 28 6.2
08_02_0567 + 18769742-18769790,18769928-18771351 27 8.2
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300... 27 8.2
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 328 GGATSGFVFSAWMKKGIIAVPAAVVLGAIAVVKKTGI 438
GG G +F+A +K ++AV ++ +G +VKK G+
Sbjct: 12 GGGGGGDLFAANLKGSLLAVASSAFIGVSFIVKKKGL 48
>06_03_0565 - 22308074-22309510,22309670-22309723
Length = 496
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 479 VDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTK 345
+D G K+ P+S+PVF T I IIPF +A T+
Sbjct: 285 MDTRVGGLKVPPASLPVFPVTFIILLAPVYDHIIIPFARRATGTE 329
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 315 EFIVFPTNILGNVGSECEGNCHTH*RAY-NIAHSTDCIDKT 196
+F++FP L +EC NC AY N++ S DKT
Sbjct: 1228 KFVLFPNRTLDACAAECSSNCSCVAYAYANLSSSISKGDKT 1268
>07_03_0815 +
21707061-21707112,21707394-21708286,21709289-21709459,
21709880-21710143,21710404-21710421
Length = 465
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 402 YHRGRHRDNPLFHPSTKHKARCGTTQEVIEFIVFPTNILGNVGSECEG 259
Y GRHR + F+PS + + +E +VF LG V EG
Sbjct: 279 YPYGRHRQHTKFNPSCDRLLKTFSRIRCLEMLVFIEPHLGGVNPLMEG 326
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 235 GPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 414
G ++ + FT + +N KN K + LG G+V+ W+ + +A PA G +
Sbjct: 62 GEILSSSNLKAFTLSELKNAT-KNFKPDSLLGEGGFGYVYKGWIDEQTLA-PARPGSGMV 119
Query: 415 AVVKK 429
VKK
Sbjct: 120 VAVKK 124
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 163 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 282
SF + F+H + V+T+GR+ I+ V + + ++T ++
Sbjct: 635 SFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASL 674
>05_01_0086 +
569137-569190,569285-569336,570026-570057,570510-570543,
570680-570747,571527-571667
Length = 126
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 286 QNIRGKNDKLNYFLGGATSGFVFSA 360
+ IRG++D N +GGA SG + SA
Sbjct: 72 ERIRGRHDWKNAMIGGALSGALISA 96
>04_04_0408 +
24987218-24987760,24988406-24988534,24988617-24988952,
24990321-24990551
Length = 412
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 115 TFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTI 213
TFV + + V+G+ G +F+V +F+ P F T+
Sbjct: 354 TFVVAIFGVVSGVFGMNFEVDLFNVPHAFEWTL 386
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 248 VWQLPSHSL-PTLPKIFVGKTINSITSWVVPHLALCLV 358
VW +P SL P ++FV K I + SW+ AL V
Sbjct: 208 VWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACV 245
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 366 HPSTKHKARCGTTQEV--IEFIVFPTNILGNVGSECEGNCHTH*RAYNI 226
+ K +C Q++ I+F F T G+ GS EG CH H ++Y+I
Sbjct: 686 YEKAKVHLQCDNGQKITEIKFASFGTP-QGSCGSYTEGGCHAH-KSYDI 732
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +1
Query: 94 GQDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFT 273
G + +VT+ ++ L G++ DV + S +++G G G+A F
Sbjct: 359 GAGVERDAYVTAYVVFMSQLLGSAGDVAVLSRSGVMEHSLGNDGDACALFRGLARGLAFD 418
Query: 274 TNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKK 372
T+ +RG +LN G + ++ AW+ +
Sbjct: 419 TDGDHYLRGVGLELNRHHGRRLNRWL--AWVAR 449
>02_03_0298 -
17428616-17428738,17428822-17428992,17429913-17430014,
17431654-17431764,17432142-17432228,17432551-17432588,
17432830-17432833,17433280-17433419,17434189-17434320,
17435289-17435354,17435966-17436013,17436055-17436160
Length = 375
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 443 KAGSFSQMRHNLLKQSNQLNMTGLFSKILKN*RDGQTVPSNRKSC 577
KA + + +++ + L+ TG +SK L D T+ SNR C
Sbjct: 252 KATELKSLGNKAVEKKDYLSATGFYSKALDLYPDDATLFSNRSLC 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,341
Number of Sequences: 37544
Number of extensions: 329818
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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