Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d16f
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36348| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13) 31 0.91
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 31 0.91
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 28 6.4
SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083) 28 6.4
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011) 27 8.5
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_36348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/74 (39%), Positives = 35/74 (47%)
Frame = +1
Query: 208 TIGRMGYIVGPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAV 387
++G G IVG G A F TT IRGK+D N+ GGA SG + K +
Sbjct: 23 SLGVKGAIVG---GAASLFAGTTCAMAAIRGKDDYKNWAAGGAASGALIGISRKSWALGS 79
Query: 388 PAAVVLGAIAVVKK 429
AAV L A A K
Sbjct: 80 GAAVALAAAAAAAK 93
>SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)
Length = 446
Score = 30.7 bits (66), Expect = 0.91
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 94 GQDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFT 273
G + + F+ + A ++GL A F + +V T +G ++ +VG + +
Sbjct: 61 GPAVVISFFIAAVAALLSGLCYAEFGSRIPKAGSAYVYTYVTLGELLAFIVGWNMILEYL 120
Query: 274 TNVAQNIRGKNDKLNYFLGGATSGFVFS---AWMKKGIIAVPAAVVLGAIAVV 423
A R ++ +N GGA F S W K + P + L AIA +
Sbjct: 121 IASATLARSCSEYINAISGGAIYKFFMSDIATWHVKALGPFPDFLAL-AIATI 172
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 30.7 bits (66), Expect = 0.91
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 94 GQDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFT 273
G + + F+ + A ++GL A F + +V T +G ++ +VG + +
Sbjct: 343 GPAVVISFFIAAVAALLSGLCYAEFGSRIPKAGSAYVYTYVTLGELLAFIVGWNMILEYL 402
Query: 274 TNVAQNIRGKNDKLNYFLGGATSGFVFS---AWMKKGIIAVPAAVVLGAIAVV 423
A R ++ +N GGA F S W K + P + L AIA +
Sbjct: 403 IASATLARSCSEYINAISGGAIYKFFMSDIATWHVKALGPFPDFLAL-AIATI 454
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 434 PVFFTTAIAPSTTAAGTAIIPFFIQALNTKPDVAPPK 324
P TT TTA T P +A T+P PP+
Sbjct: 2 PTEVTTGSLVETTAGATTAPPVLTEAATTQPPAPPPE 38
>SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 279 VGSECEGNCHTH*RAYNIAHSTDCIDKTFWMREHKHIKRSTSKTGYCSIFTGYKC 115
VG + EG TH Y A S D T+ +K T+++ YC F Y+C
Sbjct: 104 VGHDSEGR--THVNGYKGAGSYSR-DITYDFTSVTQLKELTTRSSYCGQFIKYEC 155
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 168 KRSTSKTGYCSIFTGYKCL 112
KRS + G C ++TGY+C+
Sbjct: 17 KRSVLEDGICLVYTGYQCV 35
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 357 CLDEKGDYRGACRGGTRRNSCGKEDRH 437
C+DE G +R C G + C K+ +H
Sbjct: 667 CMDEGGKFRCVCADGYKGELCEKKAQH 693
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = -2
Query: 384 RDNPLFHPSTKHKARCGTTQEVIEFIVFPTNILGNVGSECE------GNCHTH*RAYNIA 223
+DN +F + KH G Q ++F F N+L + S+ E + H +
Sbjct: 111 KDNLIFAQTNKHS---GAVQ-ALDFNPFQPNLLASGASDSEIFIWDMNSPGEHFTPGAKS 166
Query: 222 HSTDCIDKTFWMREHKHIKRSTSKTGYCSIF 130
D I W R+ +HI STS G C ++
Sbjct: 167 IPPDNISCLAWNRQVQHILASTSPCGRCVVW 197
>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
Length = 280
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -2
Query: 279 VGSECEGNCHTH*RAYNIAHSTDCIDKTFWMREHKHIKRSTSKTGYCSIFTGYKC 115
VG + EG H A +S D T+ +K T+++ YC F YKC
Sbjct: 128 VGHDSEGRLHVDNYADCGTYSRDI---TYNNTSVAQLKEVTARSSYCEQFIKYKC 179
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 357 CLDEKGDYRGACRGGTRRNSCGKEDRHR*RLDLFPR 464
C +E G Y AC+ G +C +E R +LD R
Sbjct: 514 CKNEHGGYSCACKAGFTGKNCEQECRSYKKLDTADR 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,932,670
Number of Sequences: 59808
Number of extensions: 377612
Number of successful extensions: 1084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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