Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15r
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    27   3.6  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   6.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.3  

>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/33 (30%), Positives = 24/33 (72%)
 Frame = -1

Query: 676 EALEKIQKRPXLFDGLEKWLDKLEKTVHHCAAI 578
           +++ ++++R  + DGL +  +K+++T+H  AAI
Sbjct: 511 DSVSRLERRNEIIDGLAEIGEKVQETLHLNAAI 543


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 667 EKIQKRPXLFDGLEKWL-DKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVIL 491
           E I+ R  +F G  KW  D +  TV   A        + + L ILP V  L      V+ 
Sbjct: 49  EGIRIRSSVF-GSTKWKPDVVAPTVEQLAMNSEPFDYIFVCLKILPSVYNLDTAIKEVVT 107

Query: 490 CANEWPALNDVTNIELEEILQHASLICPVLAAAL 389
             +    LN    +  E+ LQHA    PVL+  L
Sbjct: 108 PGHTCIVLNTTGIVGAEKELQHAFPNNPVLSFVL 141


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 628 EKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVIL 491
           EKW  KL K++ +  A  + N G    + +LPF   +L  G  V++
Sbjct: 120 EKWRKKLMKSIANRKAKGISNWGKKYSMFLLPFFT-VLREGLEVVV 164


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 670 LEKIQKRPXLFDGLEK-WLDKL 608
           L+K    P LFDG+E+ W+ K+
Sbjct: 651 LKKASNHPYLFDGVEESWMQKI 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,532
Number of Sequences: 5004
Number of extensions: 61894
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)