Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15r
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   5e-30
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)               31   0.72 
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    30   2.2  
SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score =  128 bits (309), Expect = 5e-30
 Identities = 62/138 (44%), Positives = 89/138 (64%)
 Frame = -1

Query: 661  IQKRPXLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVILCAN 482
            +  RP L D L++W+ + +   +  A +FVDNSGVDI+LG++PFVR L+ RGT VIL AN
Sbjct: 643  LSARPWLKDDLDEWISRTKGPPYKLAVVFVDNSGVDIILGVMPFVRELVSRGTKVILAAN 702

Query: 481  EWPALNDVTNIELEEILQHASLICPVLAAALSTGDLVVKSSGQRGPCLDFRTISIGLCTE 302
             +PALNDV + EL  +++  + +CP L +A+ +G LV  +SG   PCLD R I   L   
Sbjct: 703  SYPALNDVMHGELVILIERLAKLCPALKSAVKSGRLVAMASGVGSPCLDLRRIDADLAA- 761

Query: 301  MKVRGVDLIILEGMGRAL 248
                  +L++LEGMG +L
Sbjct: 762  -SCAEAELVLLEGMGSSL 778


>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
          Length = 263

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 568 NSGVDIVLGILPFVRGLLLRGTSVILCAN-EWPALNDVTNIE 446
           N  VD +L   PF R  ++ GTSV+ CA   + AL+ ++ ++
Sbjct: 2   NPSVDAILLSSPFTRSCVVSGTSVVACAKYAFHALSSLSGVD 43


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/88 (28%), Positives = 44/88 (50%)
 Frame = -1

Query: 409 PVLAAALSTGDLVVKSSGQRGPCLDFRTISIGLCTEMKVRGVDLIILEGMGRALHTNFNA 230
           P+ AA  +  + +V+    +G   D +T ++ LC EM+   +  I+L+ +G   H     
Sbjct: 626 PLCAACKNNKEDMVQFLLSQG-ITDVQT-ALMLCLEMRHNNLVGILLQKLG---HDREAG 680

Query: 229 CLAVDSLKLAVVKNAWLAQRLGGPLFSV 146
            +A   LKL  ++  WL+  L G  +SV
Sbjct: 681 VIAWGGLKLGELRPEWLSPALSGRNYSV 708


>SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 325 ISIGLCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAW 182
           IS+G+  EMK  G+ + +++ M       F+  +A  ++KL    N+W
Sbjct: 499 ISMGVIKEMKADGISMGVIKEMTVRYRVEFSFLIAKRNVKLFHGINSW 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,679,941
Number of Sequences: 59808
Number of extensions: 447340
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)