BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12d15r (727 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified vi... 164 7e-41 Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical p... 28 5.9 Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical pr... 28 5.9 >U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified vitellogenin-linkedtranscript protein 3 protein. Length = 755 Score = 164 bits (398), Expect = 7e-41 Identities = 81/181 (44%), Positives = 112/181 (61%) Frame = -1 Query: 673 ALEKIQKRPXLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVI 494 A++ ++ RP LFDG + + K ++ + IFVDNSG D +LGI+PF R LL G+ VI Sbjct: 570 AIDHVENRPWLFDGFDSFYKKHKE--YKSVLIFVDNSGFDYILGIIPFARELLRNGSRVI 627 Query: 493 LCANEWPALNDVTNIELEEILQHASLICPVLAAALSTGDLVVKSSGQRGPCLDFRTISIG 314 +CAN PALND+T E+ E+ LA + + ++ +GQ PC+D R + Sbjct: 628 ICANTSPALNDLTYREMVELAPELKNADSDLAKFIDSNQMMFVQTGQESPCMDARRVHQD 687 Query: 313 LCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGGPLFSVIFIY 134 L +K DL+++EGMGRALHTNFN DSLK AV+K WLA RLGG +FSV+F + Sbjct: 688 LNETVKKFNTDLVVIEGMGRALHTNFNVQFKCDSLKAAVIKTQWLADRLGGKMFSVVFKH 747 Query: 133 E 131 E Sbjct: 748 E 748 >Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical protein C34C6.6b protein. Length = 500 Score = 28.3 bits (60), Expect = 5.9 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -1 Query: 262 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 155 +G + N N AVDSLKLA+ KN A L RLG L Sbjct: 364 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 402 >Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical protein C34C6.6a protein. Length = 502 Score = 28.3 bits (60), Expect = 5.9 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -1 Query: 262 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 155 +G + N N AVDSLKLA+ KN A L RLG L Sbjct: 366 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 404 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,315,041 Number of Sequences: 27780 Number of extensions: 337135 Number of successful extensions: 775 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 774 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1708383636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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