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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15r
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...   164   7e-41
Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
            vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score =  164 bits (398), Expect = 7e-41
 Identities = 81/181 (44%), Positives = 112/181 (61%)
 Frame = -1

Query: 673  ALEKIQKRPXLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVI 494
            A++ ++ RP LFDG + +  K ++  +    IFVDNSG D +LGI+PF R LL  G+ VI
Sbjct: 570  AIDHVENRPWLFDGFDSFYKKHKE--YKSVLIFVDNSGFDYILGIIPFARELLRNGSRVI 627

Query: 493  LCANEWPALNDVTNIELEEILQHASLICPVLAAALSTGDLVVKSSGQRGPCLDFRTISIG 314
            +CAN  PALND+T  E+ E+          LA  + +  ++   +GQ  PC+D R +   
Sbjct: 628  ICANTSPALNDLTYREMVELAPELKNADSDLAKFIDSNQMMFVQTGQESPCMDARRVHQD 687

Query: 313  LCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGGPLFSVIFIY 134
            L   +K    DL+++EGMGRALHTNFN     DSLK AV+K  WLA RLGG +FSV+F +
Sbjct: 688  LNETVKKFNTDLVVIEGMGRALHTNFNVQFKCDSLKAAVIKTQWLADRLGGKMFSVVFKH 747

Query: 133  E 131
            E
Sbjct: 748  E 748


>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 262 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 155
           +G   + N N   AVDSLKLA+ KN   A L  RLG  L
Sbjct: 364 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 402


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 262 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 155
           +G   + N N   AVDSLKLA+ KN   A L  RLG  L
Sbjct: 366 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,041
Number of Sequences: 27780
Number of extensions: 337135
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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