Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.55 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.55 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.55 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 565 YYQQIWLHSDEQFSPIYPTIFLNHQTAXVFSGFFQGLHKGHSLRYL 702
           +Y + W   D   S     IFL       FS  FQ LH G +LR L
Sbjct: 163 HYLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRIL 208


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 565 YYQQIWLHSDEQFSPIYPTIFLNHQTAXVFSGFFQGLHKGHSLRYL 702
           +Y + W   D   S     IFL       FS  FQ LH G +LR L
Sbjct: 163 HYLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRIL 208


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 565 YYQQIWLHSDEQFSPIYPTIFLNHQTAXVFSGFFQGLHKGHSLRYL 702
           +Y + W   D   S     IFL       FS  FQ LH G +LR L
Sbjct: 163 HYLRTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRIL 208


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -3

Query: 98  ILKYCENHDYASIQCN*FMNFLQC 27
           I+  C N +Y    C     ++QC
Sbjct: 108 IVAVCRNEEYTGDDCQKTYQYVQC 131


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 687 VAFMKPLKKSRKDLGCL 637
           V+ M+ +K  R +LGCL
Sbjct: 320 VSKMREMKMDRTELGCL 336


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 687 VAFMKPLKKSRKDLGCL 637
           V+ M+ +K  R +LGCL
Sbjct: 320 VSKMREMKMDRTELGCL 336


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +3

Query: 267 SSIIKSTPRTFISVQRPILIVLKSRHGPL*PLDFTTKSPVD 389
           S +++  PRT +  +  +   +     P+ PL F    P++
Sbjct: 44  SGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIE 84


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +3

Query: 267 SSIIKSTPRTFISVQRPILIVLKSRHGPL*PLDFTTKSPVD 389
           S +++  PRT +  +  +   +     P+ PL F    P++
Sbjct: 44  SGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIE 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,222
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)