Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15f
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    28   1.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    28   1.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   6.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.0  
SPBC119.18 |||mitochondrial distribution and morphology protein ...    25   8.0  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 162 LLLHQQVDLKYRDCICLARIVYERDQNV 79
           +L  Q   +++R  +C+  IVY +DQ +
Sbjct: 676 MLTDQDEGIQHRGLVCICNIVYSKDQEI 703


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 153 EEAREYWLCTCEKLVEKYVKFALVNNNDPTV 245
           EE +  W   CEKLVE  +  A    +  T+
Sbjct: 339 EEVQNIWTIICEKLVETILSVAFTEQSTTTI 369


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 150 DEEAREYWLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVE-ALKELR 302
           D+ A + W+ +    VE+   F +  N+DP +E   +K  T Y+E  LK+L+
Sbjct: 702 DDTAFKLWITSRLDSVERDRDF-VYENSDPNLEHGKIKIATDYMERRLKKLK 752


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 168 YWLCTCEKLVEKYVKFALVNNNDPTVEIRALKF 266
           Y+  T  +  +K+VKF  +N+N    ++ AL+F
Sbjct: 639 YFFATASR--DKFVKFWKINDNKKICDVAALQF 669


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 93  SHILYEPDKYNPDTLDLLADEEA 161
           S + ++PD++  +TLD+L  +E+
Sbjct: 730 SRVAFDPDEWQRETLDILDRDES 752


>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +3

Query: 162 REYWLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPL 314
           ++Y  C  +    K++K  L N +    E+ A ++K+C ++ALK  +I+PL
Sbjct: 14  KKYDACFNDWYANKFLKGDLHNRDCD--ELFA-EYKSCLLKALKTKKIDPL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,490
Number of Sequences: 5004
Number of extensions: 43649
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)