Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d15f
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0170 + 12551040-12551209,12551297-12551362,12552438-125525... 66 1e-11
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288... 56 2e-08
11_01_0477 - 3688357-3690042 29 3.5
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 28 4.7
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 28 4.7
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 6.2
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 28 6.2
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 28 6.2
01_06_1043 + 34078015-34079541 28 6.2
01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417 27 8.2
>06_02_0170 +
12551040-12551209,12551297-12551362,12552438-12552504,
12552588-12552656,12552771-12552911,12553202-12553330,
12554002-12554088,12554664-12554738,12554839-12554916,
12555014-12555091,12555173-12555235,12555341-12555415
Length = 365
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = +3
Query: 231 NDPTVE---IRALKFKTCYVEALKELRINPLAHGQLTIRLLL-DINETCLRSQGFFDLWK 398
NDPTV +A KF Y L+EL+ NP ++G +LL + E LR GF D++K
Sbjct: 62 NDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCILLCRLRELVLRELGFRDIFK 121
Query: 399 QQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSI 560
+ K EN A++ + D I +D +R L RG+LAGN+FD G+ + +
Sbjct: 122 KVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEV 175
>09_06_0064 +
20627265-20627538,20628062-20628274,20628772-20628827,
20629417-20629533,20629701-20629820,20629910-20630004,
20630092-20630185,20630406-20630537,20631190-20631302,
20631423-20631657,20631950-20632028,20632029-20632161,
20632780-20632821,20632902-20632950,20633443-20633525,
20633686-20633802,20633893-20633956,20634334-20634486,
20635043-20635126,20635207-20635401,20635507-20635578,
20635599-20635610
Length = 843
Score = 56.0 bits (129), Expect = 2e-08
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +3
Query: 99 ILYEPDKYNPDTLDLLADEEAREYWL-CTCEKLVEKYVKFALVNNNDPTVEIRALKFKTC 275
+L +P Y P+T+DL D +YW + L + K + R F
Sbjct: 548 LLEDPKMYEPNTIDL--DLNEYKYWFKILSDHLPDLVDKAVASEGGTDDAKRRGDAFAHA 605
Query: 276 YVEALKELRINPLAHGQLTIRLLLDINETCLRSQGFFDLWKQQKKFENEGALASLSSRLA 455
+ L L P A+G+ + LL++ E CLR F D + K+ ENE +LA L L
Sbjct: 606 FSAHLARLMEEPAAYGKFGLANLLELREECLREFQFVDAYVSIKQRENEASLAVLPDLLM 665
Query: 456 EIDAI 470
E+D++
Sbjct: 666 ELDSM 670
>11_01_0477 - 3688357-3690042
Length = 561
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 417 NEGALASLSSRLAEIDAITNDRQR-WTELCRGVLAGNMFDWGAQAV 551
++G LS ++ DR+ W +LCRG++ +MFD G + +
Sbjct: 214 DDGKAEELSFWETDMVVPVGDRRLCWVDLCRGIILCDMFDDGDETL 259
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 420 EGALASLSSRLAEIDAITNDRQRWTELCRG 509
E A+A+ S+R ++DA + R+R+ +CRG
Sbjct: 410 EAAIAAGSAREPDLDAGSRRRRRYHRICRG 439
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 96 HILYEPDKYNPDTLDLLADEEAR 164
+++ P+ YN DT+DLLA E A+
Sbjct: 384 NVVLWPEPYNKDTIDLLAKEGAK 406
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 399 QQKKFENEGALASLSSRLAEIDAITND 479
+Q+ E EG + L+SRLA +D++T+D
Sbjct: 1682 RQRIEELEGLICMLTSRLAAVDSMTHD 1708
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 108 EPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNNNDPTVE 248
EPD YN +DL +E+ E L C++LVE + ++ + +D E
Sbjct: 704 EPDVYN-FYIDLSFNEDNLESTLALCDELVEVTLVKSIADTDDDFAE 749
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 186 EKLVEKYVK--FALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLLDINE 359
+K E+Y++ FAL + I L + EALK+L+ L LT LL + E
Sbjct: 384 QKQPEEYIQAMFALETEIKNKISILGLMPPSSLAEALKQLKDKALKRAGLTEELLQEQIE 443
Query: 360 --TCLRSQGFFDLWKQQKK 410
T R FD+ Q +K
Sbjct: 444 QRTAARKNKQFDVSDQIRK 462
>01_06_1043 + 34078015-34079541
Length = 508
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 307 FILSSFNAST*HVLNFKALISTVGSLLLTSANLTY-FSTNF 188
FI S H L+FKAL T G + AN+ Y TNF
Sbjct: 60 FITEIMKRSPTHTLSFKALGLTGGVITANPANVEYTLKTNF 100
>01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417
Length = 476
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 171 NTLLLLHQQVDLKYRDCICLARIVYERDQNVPFCYFLSKLTI 46
NTLL ++ D CL+R+V +D +P + SK+TI
Sbjct: 237 NTLLWKSVAKEVNVLDTPCLSRVVLWQDLLLPHSRYNSKVTI 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,051
Number of Sequences: 37544
Number of extensions: 233703
Number of successful extensions: 629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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