Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d15f
(580 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_14960| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_14116| Best HMM Match : 7tm_1 (HMM E-Value=4e-21) 36 0.032
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2) 31 0.90
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19) 31 0.90
SB_13881| Best HMM Match : Laminin_EGF (HMM E-Value=4.6) 29 2.7
SB_11248| Best HMM Match : LMP (HMM E-Value=0.18) 29 3.6
SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4) 28 4.8
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.8
SB_26528| Best HMM Match : Destabilase (HMM E-Value=8.8) 28 4.8
>SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Frame = +3
Query: 219 LVNNNDPTVEIRALKF-KTCYVEALKELRIN-PLAHGQLTIRLLLDINETCLRSQGFFDL 392
L + D T + A ++ C+ AL + + A G LT+ LLD E CL F D
Sbjct: 502 LPDTEDLTADAAARQYWLDCFGAALDKFCVCFRSAFGALTVHSLLDTREQCLNEFDFPDP 561
Query: 393 WKQQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILDCG 572
+ + K+ ENE AL + R+ E+D + ++ QR L RG+LAGN+FDWGA+ V+ +++
Sbjct: 562 YAELKQQENEEALKMFTRRIRELDKMESE-QRQIALVRGMLAGNVFDWGAREVSDLMEKN 620
Query: 573 L 575
L
Sbjct: 621 L 621
>SB_14960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = +3
Query: 405 KKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILDCGL 575
K+ ENE AL + R+ E+D + ++ QR L RG+LAGN+FDWGA+ V+ +++ L
Sbjct: 2 KQQENEEALKMFTRRIRELDKMESE-QRQIALVRGMLAGNVFDWGAREVSDLMEKNL 57
>SB_14116| Best HMM Match : 7tm_1 (HMM E-Value=4e-21)
Length = 362
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 177 TTNTLLLLHQQVDLKYRDCICLARIVYERDQNVPFCYFLSKLTIITVFLTVYSLPIVIV 1
TTN LLLH + C + ++ R + P C +++ +IT +L V++L ++ +
Sbjct: 43 TTNDYLLLHLAIGDLMLVCCSVLTSIFRRLELYPVCLYITMAILITRYLGVFTLTLIAI 101
>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
Length = 472
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 29 VKKTVIIVSFERK*QNGTFWSLSYTIRARQIQSRYFRSTC 148
+K T + F R N +W L Y R S +FR+TC
Sbjct: 223 IKGTPVSSVFYRIATNYNYWKLKYINRLNSFYSSFFRATC 262
>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
Length = 728
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 29 VKKTVIIVSFERK*QNGTFWSLSYTIRARQIQSRYFRSTC 148
+K T + F R N +W L Y R S +FR+TC
Sbjct: 438 IKGTPVSSVFYRIATNYNYWKLKYINRLNSFYSSFFRATC 477
>SB_13881| Best HMM Match : Laminin_EGF (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 550 TAWAPQSNILPAKTPLHNSVQRCLSLVMASISANLEL 440
TAW P I+ A P + RC+S + +SI+++L +
Sbjct: 54 TAWRPIQTIVEALFPGTVAPHRCISAIASSITSDLTI 90
>SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)
Length = 442
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +3
Query: 189 KLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLLDINETCL 368
K+ + + V + E RALK K V+ K+L LT + INE
Sbjct: 202 KIEDSRAQIGAVESQRQQTEERALKMKAMLVKTKKDLAETKNQLTALTSNEIRTINENTK 261
Query: 369 RSQGFFDLWKQQKKFENEGALASLSSRLAEID 464
R+ + + + E A AS + LAE +
Sbjct: 262 RTVDGLEQKMAKVMADCEAARASQDATLAEFE 293
>SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)
Length = 512
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = +3
Query: 138 DLLADEEAREYWLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLA 317
DL+ + YW E+ V+KYV ++N +E+ K + C E+LK L A
Sbjct: 439 DLINFAASDNYWCAVFERAVKKYVG---RSHNCKGLEMTFAKAE-CRRESLKSLE---QA 491
Query: 318 HGQLTIRLLLDINETC 365
HG L I D E C
Sbjct: 492 HGDLPIEEKDDKIEAC 507
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 111 ARIVYERDQNVP--FCYFLSKLTII--TVFLTVYSLPIVIV 1
AR +Y D+N+P F +FL L + TVF+ YS P+ ++
Sbjct: 205 ARDMYLVDENIPRAFNFFLRTLLSVFGTVFVISYSTPLFLI 245
>SB_26528| Best HMM Match : Destabilase (HMM E-Value=8.8)
Length = 183
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = +3
Query: 138 DLLADEEAREYWLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLA 317
DL+ + YW E+ V+KYV ++N +E+ K + C E+LK L A
Sbjct: 110 DLINFAASDNYWCAVFERAVKKYVG---RSHNCKGLEMTFAKAE-CRRESLKSLE---QA 162
Query: 318 HGQLTIRLLLDINETC 365
HG L I D E C
Sbjct: 163 HGDLPIEEKDDKIEVC 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,879
Number of Sequences: 59808
Number of extensions: 290565
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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