Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d15f
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified vi... 100 1e-21
Z83218-3|CAB05688.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.0
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 28 5.5
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 28 5.5
AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical... 28 5.5
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 28 5.5
AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or ad... 27 7.3
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 27 7.3
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY390552-1|AAQ94964.1| 557|Caenorhabditis elegans SMA-9 class I... 27 9.6
AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class I... 27 9.6
AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class I... 27 9.6
AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class I... 27 9.6
AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class I... 27 9.6
>U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 3 protein.
Length = 755
Score = 99.5 bits (237), Expect = 1e-21
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 7/154 (4%)
Frame = +3
Query: 126 PDTLDLLADEEAREYWLCTCEKLVEKYVKFALVN----NNDPTVEIRALKFKTCYVEALK 293
PDT+D DEEAR +W+ +K + KFA+ + +N + RA F++ +V+ +
Sbjct: 407 PDTIDFNKDEEARNFWIEILDKTINDITKFAIASQENCSNKEDLTNRAEDFQSDFVKTMD 466
Query: 294 ELRINPLAHGQLTIRLLLDINETCLRSQGFFDLWKQQKKFENEGALASLSSRLAEIDAIT 473
++ + +A+G R +L++ E L+ +GF D++ Q+K EN A+A L LA+ID +
Sbjct: 467 IIKEHHVAYGNSNARNMLEVREQILQEKGFDDIYVQKKHAENCTAIAELPRVLAKIDELK 526
Query: 474 NDRQRWTEL---CRGVLAGNMFDWGAQAVTSILD 566
N T L RG+LAGN+FDWGA+ V +++
Sbjct: 527 NTGDEKTVLEYVSRGLLAGNVFDWGAKEVVKMMN 560
>Z83218-3|CAB05688.1| 330|Caenorhabditis elegans Hypothetical
protein C31A11.6 protein.
Length = 330
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Frame = -2
Query: 132 YRDCICLARIVYERDQNVPFCYF--------LSKLTIITVFLTVYSLP 13
Y + +A Y DQN+PF Y L K+ IT F T +LP
Sbjct: 26 YDIALLMATYAYRNDQNIPFAYLIVMNVCGVLCKIAFITDFATYLALP 73
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 99 ILYEPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNN 230
++ P+KY DTL ++ + + E W+ T ++ V F ++ N
Sbjct: 114 MIRSPEKYEDDTLLIVTEPFSWEVWVITAAVILISGVIFLVMTN 157
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 99 ILYEPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNN 230
++ P+KY DTL ++ + + E W+ T ++ V F ++ N
Sbjct: 106 MIRSPEKYEDDTLLIVTEPFSWEVWVITAAVILISGVIFLVMTN 149
>AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical
protein Y69A2AR.13 protein.
Length = 207
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 473 SYGINFC*SGTETCQC-SFIFKFLLLFP 393
SYG +FC T CQC S FL ++P
Sbjct: 97 SYGTDFCKKYTNDCQCYSMRLGFLPIYP 124
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 473 SYGINFC*SGTETCQC-SFIFKFLLLFP 393
SYG +FC T CQC S FL ++P
Sbjct: 167 SYGTDFCKKYTNDCQCYSMRLGFLPIYP 194
>AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform b protein.
Length = 979
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 267 KTCYVEALKELRINPLAHGQLTIRLLLDINE 359
KT YV+ + +PL HG+LT+ L + E
Sbjct: 753 KTIYVDFVARPNCDPLDHGRLTVHLRVSRKE 783
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 267 KTCYVEALKELRINPLAHGQLTIRLLLDINE 359
KT YV+ + +PL HG+LT+ L + E
Sbjct: 1025 KTIYVDFVARPNCDPLDHGRLTVHLRVSRKE 1055
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1387 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1416
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical protein
T05A10.1i protein.
Length = 1927
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical protein
T05A10.1j protein.
Length = 1509
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1455 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1484
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 1013 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 1042
>Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical
protein T05A10.1h protein.
Length = 537
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 103 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 132
>AY390552-1|AAQ94964.1| 557|Caenorhabditis elegans SMA-9 class III
protein.
Length = 557
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 503 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 532
>AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class IIc
protein.
Length = 926
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 454 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 483
>AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 537
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 103 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 132
>AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 792
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 358 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 387
>AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 468
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 84 FGLSHILYEPDKYNPDTLDLLADEEAREYW 173
FG HIL+E + P T L + + YW
Sbjct: 35 FGQEHILFERTAHTPPTRWCLVEAQNDHYW 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,692
Number of Sequences: 27780
Number of extensions: 234760
Number of successful extensions: 683
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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