Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d15f
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family p...    93   2e-19
At4g35360.1 68417.m05024 pantothenate kinase family protein cont...    69   3e-12
At2g17340.1 68415.m02003 pantothenate kinase-related contains Pf...    66   1e-11
At2g17320.1 68415.m02001 pantothenate kinase-related similar to ...    58   3e-09
At4g05010.1 68417.m00734 F-box family protein contains Pfam PF00...    29   1.7  
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ...    29   3.0  
At4g26980.1 68417.m03882 expressed protein                             29   3.0  

>At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family
           protein similar to pantothenate kinase [Emericella
           nidulans] GI:4191500; contains Pfam profiles PF03630:
           Fumble, PF01937: Protein of unknown function
          Length = 901

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
 Frame = +3

Query: 99  ILYEPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNNNDPT-VEIRALKFKTC 275
           +L +P  Y P+T+DL +D+  REYWL    + +   V  A+ +       + R   F   
Sbjct: 527 LLADPKTYEPNTIDL-SDQGEREYWLKVLSEHLPDLVDTAVASEGGTEDAKRRGDAFARA 585

Query: 276 YVEALKELRINPLAHGQLTIRLLLDINETCLRSQGFFDLWKQQKKFENEGALASLSSRLA 455
           +   L  L   P A+G+L +  LL++ E CLR   F D ++  K+ ENE +LA L   L 
Sbjct: 586 FSAHLARLMEEPAAYGKLGLANLLELREECLREFQFVDAYRSIKQRENEASLAVLPDLLE 645

Query: 456 EIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILDCG 572
           E+D+++ + +  T L  GVLA N+FDWG++A   +   G
Sbjct: 646 ELDSMSEEARLLT-LIEGVLAANIFDWGSRACVDLYHKG 683


>At4g35360.1 68417.m05024 pantothenate kinase family protein
           contains Pfam domain, PF01937: Protein of unknown
           function; similar to SP|Q9NVE7 Pantothenate kinase 4 (EC
           2.7.1.33) (Pantothenic acid kinase 4) (hPanK4) {Homo
           sapiens}
          Length = 367

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
 Frame = +3

Query: 171 WLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLL- 347
           W+      +  + + A  +   P   +RA KF   Y E L++L+ +P +HG     +LL 
Sbjct: 45  WIDLFSNSIPSFKERAESDTTVPDAPVRAEKFAKRYAEILEDLKKDPESHGGPPDCILLC 104

Query: 348 DINETCLRSQGFFDLWKQQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNM 527
            I E  LR  GF D++K+ K  EN  A++     +   DAI ++ +R   L RG+ AGN+
Sbjct: 105 RIRELILRELGFRDIFKKVKDEENAKAISLFPEVVRLSDAINDEGKRIENLVRGIFAGNI 164

Query: 528 FDWGAQAVTSI 560
           FD G+  +  +
Sbjct: 165 FDLGSAQLAEV 175


>At2g17340.1 68415.m02003 pantothenate kinase-related contains Pfam
           domain, PF01937: Protein of unknown function; supported
           by tandem duplication of pantothenate kinase -related
           protein (TIGR_Ath1:At2g17320) [Arabidopsis thaliana]
          Length = 367

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
 Frame = +3

Query: 171 WLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLL- 347
           W+      +  + K A  +   P    RA KF   Y   L++L+ +P +HG     +LL 
Sbjct: 45  WINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLC 104

Query: 348 DINETCLRSQGFFDLWKQQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNM 527
            + E  LR  GF D++K+ K  EN  A++     ++  DAI +D +R   L RG+ AGN+
Sbjct: 105 RLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNI 164

Query: 528 FDWGAQAVTSI 560
           FD G+  +  +
Sbjct: 165 FDLGSAQLAEV 175


>At2g17320.1 68415.m02001 pantothenate kinase-related similar to
           Probable pantothenate kinase 1 (Pantothenic acid kinase
           1) (Swiss-Prot:Q8L5Y9) [Arabidopsis thaliana]; similar
           to Pantothenate kinase 4  (Pantothenic acid kinase 4)
           (hPanK4) (Swiss-Prot:Q9NVE7) [Homo sapiens]; contains
           Pfam PF01937: Protein of unknown function
          Length = 361

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
 Frame = +3

Query: 171 WLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLLD 350
           W+      +  + K A  + + P    RA  F+  Y   L+  + +P ++G     ++L 
Sbjct: 39  WINVFANSIPSFKKRAESDTSVPDAPARAKIFEQRYAGFLEGWKKDPESNGGPPDGVILG 98

Query: 351 -INETCLRSQGFFDLWKQQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNM 527
            + E  LR  GF D++K+ K  EN  A++     ++  DAI +D +R   L RG+ AGN+
Sbjct: 99  RVREHLLRELGFRDIFKKVKDEENAKAISLFPEVVSLSDAIEDDGERLENLVRGIFAGNI 158

Query: 528 FDWGAQAVTSI 560
           FD G+  +  +
Sbjct: 159 FDLGSAQLAEV 169


>At4g05010.1 68417.m00734 F-box family protein contains Pfam
           PF00646: F-box domain; similar to late embryogenesis
           abundant protein (GI:1350541) (PIR|T09287) {Picea
           glauca}
          Length = 164

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 568 QSKILVTAWAPQSNILPAKTPLHNSVQRCLSLV 470
           + +IL++  AP+++  P K P H + + C SL+
Sbjct: 32  RKRILISKRAPENDSPPVKRPSHETTESCRSLL 64


>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 594

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 117 KYNPDTLDLLADEE---AREYWLCTCEKLVEKYVKFALVNNNDPTVEIRALKFKTCYVEA 287
           KY+   L L  D +   A  YW   CEK +++ + F    ++ PT+ I  +     YV+ 
Sbjct: 470 KYDRHPLKLCYDGDKDMAGSYWCEICEKEMDQNIIFYTCESSGPTIHIECVLGDFRYVKP 529

Query: 288 LKELRIN 308
                 N
Sbjct: 530 RLHFEFN 536


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 571 PQSKILVTAWAPQSNILPAKTPLHNSVQRCLSLV 470
           P++KILV+A+   S + P K+   + V  CL ++
Sbjct: 22  PENKILVSAYVSSSRMSPLKSKPPSLVSSCLGVI 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,407
Number of Sequences: 28952
Number of extensions: 209432
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)