Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d14r
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    64   1e-11
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    48   1e-06
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    29   0.83 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   1.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   2.5  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   2.5  

>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 28/70 (40%), Positives = 47/70 (67%)
 Frame = -3

Query: 660 EQQLTDALKKAMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEI 481
           E+++ D L + +   + + V D+SGGCG+M+++++++K F G N + QHRLV   LK EI
Sbjct: 33  ERRIKDILTEKLSPSS-LRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEI 91

Query: 480 AEMHGIRIHT 451
             MHG+ + T
Sbjct: 92  RNMHGLNLST 101


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = -3

Query: 615 TYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 469
           T+I +QD+SGGCG  FE+ + +  F G + + +HRLV   L+  I ++H
Sbjct: 18  THIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIH 66


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = -2

Query: 223 ETNKSMCTCRDITNLMVLIIHMLQVSWNCITQANSLSSFVFLLTFYVHNC*HHKLLICC 47
           + N+ + TC  +   ++ +++ L         A+ + +F  L+T Y  +C  + +  CC
Sbjct: 115 DPNQVLSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFASCGSYAIYACC 173


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 319 LQYKYTCLMAITVFLCIFSRNSSFQKI*MLFPSSAIFSLRGGRRRVNTDA---MHFCYFI 489
           + Y YT L+AI   L  F+R +       +      FS+R  ++ VN      +H C F+
Sbjct: 168 ISYLYTFLLAIVSVLGFFTRITFLA---FVIAPYIYFSVRCFKKNVNNPKDIFLHLCIFV 224

Query: 490 LQRICY*SVLFHSVQPYEFF 549
              + + +VL   ++ Y+F+
Sbjct: 225 --SVSFATVLACILEDYKFY 242


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 19  LNKISYCYHYNILTIYDVNNYVHKRSIKIQKK 114
           LN+IS    +N L   D+ N V  R +++QK+
Sbjct: 773 LNRISSIVIFNRLRRVDIRNIVENRILEVQKR 804


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 293 WLTFTSKRIFSISILV*WQ*LYFYVFFPEIRHFR 394
           WL    KR+ + S++  W  ++  V F  I H R
Sbjct: 96  WLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVR 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,657
Number of Sequences: 5004
Number of extensions: 64832
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)