Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d14r
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7)              30   2.0  
SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6)                  28   6.2  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18)              28   8.1  

>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 603 VQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMHGIRIHT-TP 445
           V+D+S GCGA  E  + +++F G   +++H++V   L+ E+  +H     T TP
Sbjct: 2   VKDLSDGCGAKIEAVIVSEKFQGKPLLQRHKMVYGCLEEEMKTIHAFSQKTYTP 55


>SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 280 FFQFLIHHLQICTKVMISDETNKSMCTCRDITNLMVLIIHML--QVSWNCITQANSLSSF 107
           F  FL  +  + TKVM SD+ N++ C C     L+V    +L  QV    +     LS F
Sbjct: 40  FLFFLTGYAMVTTKVMPSDKCNQTECECVVDFGLIVTGSDVLWRQVGQPIVMFITCLSLF 99

Query: 106 VFLLTF 89
           +  L F
Sbjct: 100 LEFLQF 105


>SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 630 AMPGITYISVQDIS--GGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 469
           A P I+Y S+ DI      G  F+I V   E VG+++V+ ++ VT  +K +  ++H
Sbjct: 348 AYPSISYFSLLDIHRLSKKGGAFQIPVILAEKVGMDKVRLNQPVT-MIKQDEDKIH 402


>SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 428 SHCVAAGVV*IRMPCISAISFFRESVTNLCCFTLFNPTNSLA 553
           S+C+  G++   +P I A+  F + V    C  L +P+N LA
Sbjct: 125 SYCLLGGLLKGALPKIEALYIFCDIVDRSQCLALDDPSNVLA 166


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -2

Query: 190 ITNLMVLIIHMLQVSWNCITQANSLSSFVFLLTFYVH 80
           +T+ +V+++  + V+W+CI    +  S +FL  F+++
Sbjct: 460 VTSFVVMLLTGV-VAWSCIAAITNFFSLLFLTMFFIY 495


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 503  VTNLCCFTLFNPTNSLASTLISNIAPQPPDISCTLMYVIPGIAFFNASVSCCSLET 670
            + ++ CF L + ++SL+   +SN  P      CT   V P +     SV C  L +
Sbjct: 898  IGSVLCFQLSSSSSSLSVYCVSNCLPHHRHCQCT---VFPTVFIVIVSVLCFQLSS 950


>SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18)
          Length = 364

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 107 KRREGISLCDAVPRYLEHVNDENH*ICDVSTSAHAFIRFI*NHNLSTYLQMMDEKL 274
           K++     CD+        N+ +H +C+   SAH  +R + +H L +  ++   KL
Sbjct: 67  KKKPACESCDSGEPAQGRCNECDHFVCEHCISAHKRLRLLQHHTLLSLDEIKSGKL 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,604,963
Number of Sequences: 59808
Number of extensions: 444568
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)