Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d14r
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 57 1e-08
At1g55805.1 68414.m06392 BolA-like family protein contains Pfam ... 33 0.23
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa... 31 0.54
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.95
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.95
At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabol... 30 1.7
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 29 2.2
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 29 2.9
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 29 2.9
At5g08090.1 68418.m00943 hypothetical protein 29 3.8
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 28 6.7
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 28 6.7
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 27 8.8
At1g12190.1 68414.m01411 F-box family protein contains F-box dom... 27 8.8
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = -3
Query: 669 VSKEQQLTDALKKAMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLK 490
V+KEQ K P ++ V DISGGCG+ FE+ V +++F G +++HR+V +L+
Sbjct: 2 VTKEQVEASLTSKLKP--IHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALE 59
Query: 489 NEIAEMHGIRI 457
E+ E+H + I
Sbjct: 60 EEMKEIHALSI 70
>At1g55805.1 68414.m06392 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 160
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 570 FEISVEAKEFVGLNRVKQHRLVTDSLKNEI-AEMHGIRI 457
F + + +K F G+N VK+HRLV L+ E+ +H + I
Sbjct: 110 FNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSI 148
>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 545
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 298 QPLGAEFFQFLIHHLQICTKVMISDETNKSMCTCRDITN 182
Q LG+ F +HH + C ++S + CTCR +TN
Sbjct: 375 QRLGSRFENVAVHHDRSC---VLSGQDQAGRCTCRAVTN 410
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -2
Query: 436 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 257
AM ++ RE+A + S++ KY+ IQ++ T D + QP+ H
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV----------H 244
Query: 256 LQICTKVMISDETNKSMCTCRDITNLMV 173
L + T I D T K +C +D L++
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKDCAMLVM 272
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -2
Query: 436 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 257
AM ++ RE+A + S++ KY+ IQ++ T D + QP+ H
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV----------H 244
Query: 256 LQICTKVMISDETNKSMCTCRDITNLMV 173
L + T I D T K +C +D L++
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKDCAMLVM 272
>At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabolism
associated domain-containing protein similar to SufE
protein [Erwinia chrysanthemi] GI:11342550; contains
Pfam profiles PF02657: Fe-S metabolism associated
domain, PF01722: BolA-like protein
Length = 371
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -3
Query: 570 FEISVEAKEFVGLNRVKQHRLVTDSLKNEI-AEMHGIRI-HTTPA 442
F + + + F G + VK+HRL+ D L++E+ + +H + I TPA
Sbjct: 325 FNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPA 369
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 442 RHAMRILLKREIASKFSEMTNFWKKYIKIQLLP 344
R A +LLK + + MT +KYIK +LLP
Sbjct: 69 RQAAGLLLKNNLRGAYPSMTQENQKYIKSELLP 101
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = -2
Query: 436 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 257
A+ I+ RE+A + S++ K++KIQ++ T +D + QP+ H
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV----------H 251
Query: 256 LQICTKVMISDETNKSMCTCRDITNLMV 173
L + T I D T K +C +D + L++
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKDCSVLVM 279
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = -2
Query: 436 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 257
A+ I+ RE+A + S++ K++KIQ++ T +D + QP+ H
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV----------H 251
Query: 256 LQICTKVMISDETNKSMCTCRDITNLMV 173
L + T I D T K +C +D + L++
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKDCSVLVM 279
>At5g08090.1 68418.m00943 hypothetical protein
Length = 322
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 213 LFVSSEIITLVHICK*WMRNW 275
+FVS+ ++ L+++CK W ++W
Sbjct: 271 IFVSTLVLLLLYLCKSWCKSW 291
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -3
Query: 678 KNCVSKEQQLTDALKK------AMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQ 517
K C+ + ++L+ + + A PG + + CG + E+SVE E V +K
Sbjct: 120 KQCLKQARRLSKVINRFAQRVEADPGTSTVEEVSAVADCGELAELSVEYLETV-TEELKA 178
Query: 516 HRLVTDSLKNEIAEMHG 466
L+T +L + + + G
Sbjct: 179 AELMTAALVDRVTSLLG 195
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 94 TFYVHNC*HHKLLICCSDSNKKFC 23
+F++ N ++CC D N K C
Sbjct: 305 SFFIDNVYQKSFIMCCEDENNKLC 328
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = -2
Query: 436 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 257
A+ ++ RE+A + S++ KY+KI+++ T D + QP+ H
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPV----------H 274
Query: 256 LQICTKVMISDETNKSMCTCRDITNLMV 173
L + T I D K +C +D L++
Sbjct: 275 LLVGTPGRILDLAKKGVCVLKDCAMLVM 302
>At1g12190.1 68414.m01411 F-box family protein contains F-box domain
Pfam:PF00646
Length = 375
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -2
Query: 94 TFYVHNC*HHKLLICCSDSNKKFC 23
++++++ +L++CCSD N K C
Sbjct: 307 SYFINDIYEKRLVMCCSDENGKAC 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,023
Number of Sequences: 28952
Number of extensions: 311830
Number of successful extensions: 718
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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