Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d14f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    64   1e-11
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    48   8e-07
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   0.89 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   1.6  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   2.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.3  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   8.3  

>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 28/70 (40%), Positives = 47/70 (67%)
 Frame = +2

Query: 119 EQQLTDALKKAMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEI 298
           E+++ D L + +   + + V D+SGGCG+M+++++++K F G N + QHRLV   LK EI
Sbjct: 33  ERRIKDILTEKLSPSS-LRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEI 91

Query: 299 AEMHGIRIHT 328
             MHG+ + T
Sbjct: 92  RNMHGLNLST 101


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +2

Query: 164 TYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 310
           T+I +QD+SGGCG  FE+ + +  F G + + +HRLV   L+  I ++H
Sbjct: 18  THIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIH 66


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
 Frame = -3

Query: 298 YFILQRICY*SVLFHSVQP--YEFFSFHTYLKHSATTPRYILHTDVRDSRHSLF--QCIC 131
           YF L  +C   +LFHS+    Y F +     ++ +    +           S+F    IC
Sbjct: 202 YFFLFLLCTIQLLFHSILRLGYHFNALRDMRQYPSFLRSWWFAIKSEGELGSVFLISLIC 261

Query: 130 QLL---FFGNTILFVDAARSSCTSPVSSDRTHLTINFYFFLYFDN 5
            +L     G     V A  ++  S   SD  HL  N   ++Y++N
Sbjct: 262 SVLVLCLLGYEFFLVYAGYTTNESEKWSDLAHLVKNRKVYMYYEN 306


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -3

Query: 460 LQYKYTCLMAITVFLCIFSRNSSFQKI*MLFPSSAIFSLRGGRRRVNTDA---MHFCYFI 290
           + Y YT L+AI   L  F+R +       +      FS+R  ++ VN      +H C F+
Sbjct: 168 ISYLYTFLLAIVSVLGFFTRITFLA---FVIAPYIYFSVRCFKKNVNNPKDIFLHLCIFV 224

Query: 289 LQRICY*SVLFHSVQPYEFF 230
              + + +VL   ++ Y+F+
Sbjct: 225 --SVSFATVLACILEDYKFY 242


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 486 WLTFTSKRIFSISILV*WQ*LYFYVFFPEIRHFR 385
           WL    KR+ + S++  W  ++  V F  I H R
Sbjct: 96  WLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVR 129


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 358 LKREIASKFSEMTNFWKKYIKIQL 429
           LK+E   K  +   FWKKY+++QL
Sbjct: 537 LKKE--KKIPKKLPFWKKYLELQL 558


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 363 LQQYSHCVAAGVV*IRMPCISAISFFRESV 274
           L +Y+ C+  G+  I  P +  +S F+E +
Sbjct: 688 LSRYTSCIGPGLFDIHSPRVPPVSEFKERI 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,549
Number of Sequences: 5004
Number of extensions: 51778
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)