Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d14f
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905     52   5e-07
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062...    29   3.7  

>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
          Length = 94

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +2

Query: 176 VQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMHGIRIH--TTPAATQ 346
           V D SGGCGA +EI V +++F G   +++HR+V  +L   +AE+H + I    TPA  Q
Sbjct: 23  VTDTSGGCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMAEIHAVSIKKALTPAQAQ 81


>04_04_1693 +
           35404336-35404515,35405732-35406019,35406189-35406278,
           35406487-35406564,35406638-35406718,35407300-35407350,
           35407788-35407933,35408169-35408235,35408328-35408387,
           35408472-35408501,35408776-35408835,35408936-35409052,
           35409790-35409903,35410068-35410166,35410572-35410697,
           35410774-35410848,35410958-35411029,35411167-35411277,
           35411760-35411843,35413149-35413256,35414207-35414308,
           35414393-35414455,35414524-35414598,35414901-35414972,
           35415063-35415187,35415251-35415302,35415380-35415448,
           35415525-35415540,35415941-35415989,35416607-35417180
          Length = 1077

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 337 RHAMRILLKREIASKFSEMTNFWKKYIKIQLLP 435
           R A  +LLK  + + FS M    ++Y+K +LLP
Sbjct: 67  RQAAGLLLKNNLRATFSSMPPASQQYVKSELLP 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,605
Number of Sequences: 37544
Number of extensions: 298046
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)