Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d14f
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7)              29   2.8  
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 29   3.7  
SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6)                  28   4.9  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)                      27   8.6  

>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 176 VQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMHGIRIHT-TP 334
           V+D+S GCGA  E  + +++F G   +++H++V   L+ E+  +H     T TP
Sbjct: 2   VKDLSDGCGAKIEAVIVSEKFQGKPLLQRHKMVYGCLEEEMKTIHAFSQKTYTP 55


>SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +2

Query: 149 AMPGITYISVQDIS--GGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 310
           A P I+Y S+ DI      G  F+I V   E VG+++V+ ++ VT  +K +  ++H
Sbjct: 348 AYPSISYFSLLDIHRLSKKGGAFQIPVILAEKVGMDKVRLNQPVT-MIKQDEDKIH 402


>SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7)
          Length = 245

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 499 FFQFLIHHLQICTKVMISDETNKSMCTC 582
           F  FL  +  + TKVM SD+ N++ C C
Sbjct: 40  FLFFLTGYAMVTTKVMPSDKCNQTECEC 67


>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  RSCGQRLRKELCFQRTTTDRCIEKGYAG 159
           RS   R+++   FQ+ ++ +C++KGYAG
Sbjct: 384 RSSRGRVKEIKVFQQRSSQQCMQKGYAG 411


>SB_22493| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
          Length = 208

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 351 SHCVAAGVV*IRMPCISAISFFRESVTNLCCFTLFNPTNSLA 226
           S+C+  G++   +P I A+  F + V    C  L +P+N LA
Sbjct: 125 SYCLLGGLLKGALPKIEALYIFCDIVDRSQCLALDDPSNVLA 166


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 276  VTNLCCFTLFNPTNSLASTLISNIAPQPPDISCTLMYVIPGIAFFNASVSCCSLET 109
            + ++ CF L + ++SL+   +SN  P      CT   V P +     SV C  L +
Sbjct: 898  IGSVLCFQLSSSSSSLSVYCVSNCLPHHRHCQCT---VFPTVFIVIVSVLCFQLSS 950


>SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 373 ASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHHLQICTKVMIS 552
           A  F ++ +  K   ++   PLD Y      L    QP G    Q L++ ++  ++   S
Sbjct: 300 AFNFPDLYSNLKSNSEVLTSPLDLYATLRHILSYPKQPTGIRVGQSLLNRIEPSSRTCAS 359

Query: 553 DETNKSMCTC 582
              ++  C C
Sbjct: 360 AGIDRHWCPC 369


>SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)
          Length = 84

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 203 AMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 310
           A  E+    KEFV  N VKQ + +T  L  + A  H
Sbjct: 28  AALEVERMVKEFVANNEVKQIKKLTQVLAEDFAVSH 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,621
Number of Sequences: 59808
Number of extensions: 364786
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)