Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d14f
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 57 1e-08
At1g55805.1 68414.m06392 BolA-like family protein contains Pfam ... 33 0.19
At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabol... 30 1.3
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 29 1.8
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 29 1.8
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 29 1.8
At5g08090.1 68418.m00943 hypothetical protein 29 3.1
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 28 5.4
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 28 5.4
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 28 5.4
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r... 27 9.4
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 27 9.4
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +2
Query: 110 VSKEQQLTDALKKAMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLK 289
V+KEQ K P ++ V DISGGCG+ FE+ V +++F G +++HR+V +L+
Sbjct: 2 VTKEQVEASLTSKLKP--IHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALE 59
Query: 290 NEIAEMHGIRI 322
E+ E+H + I
Sbjct: 60 EEMKEIHALSI 70
>At1g55805.1 68414.m06392 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 160
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 209 FEISVEAKEFVGLNRVKQHRLVTDSLKNEI-AEMHGIRI 322
F + + +K F G+N VK+HRLV L+ E+ +H + I
Sbjct: 110 FNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSI 148
>At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabolism
associated domain-containing protein similar to SufE
protein [Erwinia chrysanthemi] GI:11342550; contains
Pfam profiles PF02657: Fe-S metabolism associated
domain, PF01722: BolA-like protein
Length = 371
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 209 FEISVEAKEFVGLNRVKQHRLVTDSLKNEI-AEMHGIRI-HTTPA 337
F + + + F G + VK+HRL+ D L++E+ + +H + I TPA
Sbjct: 325 FNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPA 369
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 343 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 522
AM ++ RE+A + S++ KY+ IQ++ T D + QP+ H
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV----------H 244
Query: 523 LQICTKVMISDETNKSMCTCRD 588
L + T I D T K +C +D
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKD 266
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 343 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 522
AM ++ RE+A + S++ KY+ IQ++ T D + QP+ H
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV----------H 244
Query: 523 LQICTKVMISDETNKSMCTCRD 588
L + T I D T K +C +D
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKD 266
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 337 RHAMRILLKREIASKFSEMTNFWKKYIKIQLLP 435
R A +LLK + + MT +KYIK +LLP
Sbjct: 69 RQAAGLLLKNNLRGAYPSMTQENQKYIKSELLP 101
>At5g08090.1 68418.m00943 hypothetical protein
Length = 322
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -2
Query: 566 LFVSSEIITLVHICK*WMRNW 504
+FVS+ ++ L+++CK W ++W
Sbjct: 271 IFVSTLVLLLLYLCKSWCKSW 291
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 101 KNCVSKEQQLTDALKK------AMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQ 262
K C+ + ++L+ + + A PG + + CG + E+SVE E V +K
Sbjct: 120 KQCLKQARRLSKVINRFAQRVEADPGTSTVEEVSAVADCGELAELSVEYLETV-TEELKA 178
Query: 263 HRLVTDSLKNEIAEMHG 313
L+T +L + + + G
Sbjct: 179 AELMTAALVDRVTSLLG 195
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 343 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 522
A+ I+ RE+A + S++ K++KIQ++ T +D + QP+ H
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV----------H 251
Query: 523 LQICTKVMISDETNKSMCTCRD 588
L + T I D T K +C +D
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKD 273
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 343 AMRILLKREIASKFSEMTNFWKKYIKIQLLPLDKYTYTEDSL*SESQPLGAEFFQFLIHH 522
A+ I+ RE+A + S++ K++KIQ++ T +D + QP+ H
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV----------H 251
Query: 523 LQICTKVMISDETNKSMCTCRD 588
L + T I D T K +C +D
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKD 273
>At3g54430.1 68416.m06021 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 183
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 76 RSCGQRLRKELCFQRTTTDRCIEKGY 153
R CG R +KE F+R T C +GY
Sbjct: 42 RDCGNRAKKECLFERCRT-CCKSRGY 66
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 341 WRPASCEYGCHAFLLFHSSENLLLICVVSLCSTLRIL 231
W E+G +++ ++ NLL IC+V ST+ ++
Sbjct: 134 WIAVDLEFGKDREIIYMTTSNLLQICLVKTGSTIPMI 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,473
Number of Sequences: 28952
Number of extensions: 253751
Number of successful extensions: 595
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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