Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12r
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28972| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)                    29   2.7  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_2998| Best HMM Match : SRP19 (HMM E-Value=5)                        28   8.1  

>SB_28972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 479 HVNCNSSHCRITAS*EIIKQS*NEKQNIPNREQLNL 372
           HVNC S+H + TA+  I ++  NEK+   N+  +N+
Sbjct: 94  HVNCRSNHGKSTAT--IFREQENEKKRKYNQRVMNV 127


>SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 809

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 209 IGHSVAASCHSFSIFTLQ--NFFKTCMYTYSYTLT 307
           IG++V+A C + ++  L+  + F  C YT++YT T
Sbjct: 451 IGYAVSACCDAAAVPALRLGDLFPYCAYTHAYTYT 485


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 202 KWAYWKFTIWSFVIGAASSIAVMLRMRVLNYRAKRRARQILSN 74
           +W +W   I  FV+GA   I   L+  V   +A  +AR++ +N
Sbjct: 232 RWVFWIAAIPGFVVGAL--IVFTLKEPVKGEQAPMQARKVFTN 272


>SB_2998| Best HMM Match : SRP19 (HMM E-Value=5)
          Length = 258

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 370 WVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKCENGETVTRSCDRVAYLEKWAY 191
           ++  P+++I  C  C++ ++ S    +   T  K I     GET  R  D VA LEKWA 
Sbjct: 164 FLVNPFQII--CPICNEIKVLSNMNQIRALT--KHIRDAHYGETKGR--DLVARLEKWAK 217

Query: 190 WKFT 179
             +T
Sbjct: 218 NNYT 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,828,165
Number of Sequences: 59808
Number of extensions: 364756
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)