Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12r
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-6|AAF36074.1|  167|Caenorhabditis elegans Human jtb gen...    57   1e-08
AB016495-1|BAA34305.1|  133|Caenorhabditis elegans cJTB-like pro...    56   3e-08
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    28   5.4  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    28   5.4  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      28   5.4  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      28   5.4  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      28   5.4  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC024214-6|AAF36074.1|  167|Caenorhabditis elegans Human jtb gene
           related protein 1 protein.
          Length = 167

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
 Frame = -3

Query: 529 IETCSKRXXXXXXXXXXXXTVIVLIVESRLAE-RLSSSHRMKNKTFPTENNST------- 374
           +E CS +            +++V  +E    E  ++S   MK   + TE+  T       
Sbjct: 1   MEYCSTKQISTFVLALIGFSILVFFIEEYTEESEMNSEMEMKKAFYKTEHGGTTGKLEKV 60

Query: 373 --------CWVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKC-ENGETVTRSCD 221
                   CW ++P++V+++C PC DFEI++   G C+ T + + + C ++  TV R C 
Sbjct: 61  VTEYPAEECWKHEPFEVVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCP 120

Query: 220 RVAYLEKWAYWKFTIWSFVIGAASSIAVMLRMRVLNYRAKRRARQ 86
                 +  ++ F + +  I   S ++   R   L      R  Q
Sbjct: 121 SPKQSRRHEFYLFYVVNAAILIVSFLSTTQRKAQLERAVYMRLPQ 165


>AB016495-1|BAA34305.1|  133|Caenorhabditis elegans cJTB-like
           protein.
          Length = 133

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = -3

Query: 373 CWVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKC-ENGETVTRSCDRVAYLEKW 197
           CW ++P++V+++C PC DFEI++   G C+ T + + + C ++  TV R C       + 
Sbjct: 35  CWKHEPFEVVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCPSPKQSRRH 94

Query: 196 AYWKFTIWSFVIGAASSIAVMLRMRVLNYRAKRRARQ 86
            ++ F + +  I   S ++   R   L      R  Q
Sbjct: 95  EFYLFYVVNAAILIVSFLSTTQRKAQLERAVYMRLPQ 131


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 554 TVLSVVIANTRKNIIINLFSSQYHLFSLKEHKSGFH 661
           T+  V   NT+K+ + NLF S+ HL SL   +   H
Sbjct: 428 TIQCVSDMNTKKDALTNLFESERHLHSLPSDQQIVH 463


>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 212 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 105
           +F++  +L+V  LV   W CS+++     N+SSQ+ S
Sbjct: 3   IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 421 SHRMKNKTFPTENNSTCWVYQPYKVISECHPCSDFEIRSKSIGVCIH 281
           SH MKNK F +E   T W+    K  +  H    F++ S ++ +  H
Sbjct: 451 SHLMKNKPFTSEERVTKWIDFVLKYETSEH----FDLESNNLSIIEH 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,262
Number of Sequences: 27780
Number of extensions: 291776
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)